Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq492 508 7e-139 seq388 214 2e-50 >seq492 Length=50397 Score = 508 bits (562), Expect = 7e-139 Identities = 1360/2062 (66%), Gaps = 43/2062 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| ||||| ||||| ||||| | | |||||||| |||||||| || ||||||| Sbjct 16262 GTGAACTGAATAGGAGCAGATGCAGCCATAGTACGTAGGTAGTACATGCCAGTTTTTAAG 16321 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | ||||||| |||||||||||| |||| |||| | | || ||| | Sbjct 16322 CCTAATTTCCATCCAGCAAAATGCATACTTGTTATTTTGCCCATAGTTGGGTCTTTCAAG 16381 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || |||||||| || || ||||| || || || || | || |||||||| | || Sbjct 16382 TGAATATTCATTGACTGTGACTGATCAATAAATGCACCACGATCAGCAGCCATCTGAATT 16441 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || |||| || ||||||| ||||| || | | ||||| || |||||| Sbjct 16442 ATGGTGCGCTGTGAGATCTCCCAAACTGTTTTGTAGAGTGCTTTAATTTCGGCTGGAATA 16501 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 |||| |||||||||| || || ||||| | || || | ||| || || | |||| | Sbjct 16502 TTTGATATATTCTGAATAGAGCCTCCATCAGATATGATGCGATTTTTCATGTTATCAGAC 16561 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 ||||| | || | | || | || | ||||| || | |||||| ||||| Sbjct 16562 CATAAGCCCATATCTACCAGATCTTTGAGTAACCAGGGATTTACAATTTGAAACTCTCCT 16621 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | || || | || | ||| |||||| |||||| || || | |||||||| ||| Sbjct 16622 GCTAAAACACGGCGTGAGTATATATTAGAGGTATATGGCTCAAAACACTCATTAAATCCA 16681 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | ||||||| || ||| || ||||| || || || | ||| ||||| | ||| || Sbjct 16682 AGAATTTGACTTGTACTTGCGGTTGGCATTGGGGCTACGAGTAAGCTATTCCGAAGGCCA 16741 Query 62472 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 62531 || | || |||| | | |||| || ||||||| ||| | || | ||| ||| Sbjct 16742 TAAATCCTAATTTCAGCCTTTAAAGAATCCCAATCCCATAAGTCTGTAGGTGTAACGCCC 16801 Query 62532 NNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGT 62591 ||| || ||| | |||| || || | || || ||||||| Sbjct 16802 CACATATCGTATTGAAGCTCACCCATCGAGGCGGGGGAGCCCTCGTAAGTCTCGTATGTA 16861 Query 62592 CCTTCCTTCTCAGCTAGTTCACAACTC--GCCTCTAATGCACCGTAATAAATGGTTTCGA 62649 ||| || | |||| ||| ||| | || || | | ||| |||||||| | Sbjct 16862 CCTAGTTTTTTGGCTAAGTCA--ACTGAAGATGTTAGAGCTGCATGATATATGGTTTCAA 16919 Query 62650 AGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAA 62709 |||||| || || |||| || ||| || | || ||||| | || | || Sbjct 16920 AGATCTGTTTGTTGAGATGTTTTGCCTCTGGAGAGTCGAATGGCAAGCGCAAAGCCAAAA 16979 Query 62710 ACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTT 62769 || | || |||| |||||||| || | | | || |||| || | ||| | || Sbjct 16980 ACACATCTGCTAGCCCTTGAACTCCCACAGCTATTGGTCGGTGGCGTAAATT-GCTCTTA 17038 Query 62770 C-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATT 62828 | |||||| || | |||||| ||||||| ||| || |||||||| ||||| || || | Sbjct 17039 CGAGCTTCAGGCACAGGATAGTAATTAACATCAATGATTTTATTCAGATTCCTAACTACA 17098 Query 62829 ACTTTGACC-ACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC-----TATTA-CAAA 62881 || | ||| ||||| | |||||| |||||||||| ||| ||||| || | Sbjct 17099 ACCT-GACAGACATCATGAAGTTTGTGAAAATCAAAAGTATTATCAGCTGTATTAACATA 17157 Query 62882 CATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTG 62941 | ||| || | ||||||| ||||||||| || || |||| | | | |||| Sbjct 17158 GGTCGGCAAAGCTAGGGATGCCAAATTACAAACAGCCACTTCATCCGGAGATGAGTATTC 17217 Query 62942 TATTATCTCAGTGCAAAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATTACT 62998 | || || || ||||||||| |||| |||||| || | ||||| |||||| || Sbjct 17218 AACAATTTCGGTACAAAGATTAGAGCTACG---GATAGTCCCGAGATTTTTTTGATTGCT 17274 Query 62999 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63058 |||||| ||||| ||||| || || || || || || ||||||||||| | || | ||| Sbjct 17275 CTTTTTATTACATGCATCTTTGTAGAGCATAAAAGGGGTACCAGTTTCTGTTTGTGCTTC 17334 Query 63059 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT-T 63117 || || | | ||| | | | ||| || |||| || || |||||| ||| | Sbjct 17335 GATTATTGAGTACCATAGCTTTTGTGCC---ATAATAG--TTCTACGGCCTTTCCCTTCT 17389 Query 63118 CGT--ATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 || ||| | | ||| || || || || || || | |||| | | |||||| Sbjct 17390 TGTTCATACTTTTCATATAAAGCCTCAAATTCATCGCCATACACATCAGCTAGACCAGGA 17449 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 |||||| || ||||||| | ||| || || | | | |||| |||||||||||| Sbjct 17450 CATTCACAAGGGCACATCAGGGTCCATTCACCATTTTTTTCAACTCTCTTCATAAAGAGA 17509 Query 63234 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 ||||| |||||||| || ||| |||||||| | | | | ||| || || || ||| Sbjct 17510 TCAGGTATCCAAAGGGC-ATAGAATAGATCACGTGCACGAACTTCTTCTTTGCCGTGATT 17568 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 || || ||||||||| | | ||||| | ||||| || ||||| ||||| || | Sbjct 17569 TTTGCGGAGGTCGAGGAACTCAAATATATCGGCGTGCCATGGCTCCAAATATATAGCGAA 17628 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 |||| || || || || || || ||||| | ||||| || || ||||| | |||| Sbjct 17629 TGCTCCCGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTATTATTGAAGACTCG 17688 Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472 | ||| || | |||||| ||||| | ||||| || || | |||||| || | || Sbjct 17689 GAGCATCGGTACAATACCATTTGAGTTTCCATTTGTTCCTGCGATATAAGCACCTGTCGC 17748 Query 63473 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 ||||| | ||| || || || || || || ||||||| || | ||||| Sbjct 17749 GCGAATCCGATGAATATTTAAGCCAATACCACCGGCATTTTTAGAAATCATAGCGCAAGT 17808 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||| || || || ||||| || || || ||||| || |||| | || || ||| || Sbjct 17809 TTTCAAAGTATCGTAGATTCCATCAATACTATCCTCTTTCATATCAATTAAAAAGCATGA 17868 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||| | ||| | ||| || || ||||| ||||| ||||| |||||||| | Sbjct 17869 AGAGAGTTGAGATTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAGCATGCGTAAAGTA 17928 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 ||| | || | |||||| || ||||| ||||| || || || || ||| |||||||| Sbjct 17929 TTTATTGGACATTAGATTATAAGTCTCTATAGCAGATTCAATGTCATCTTGGTGAATTCC 17988 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 || ||||||||||||| ||| || || || | || || || || | || | || Sbjct 17989 AACAGCGACACGCATTATCATATGTTGTGGCCGCTCCACAATTTTATCATTGA-GGCGAA 18047 Query 63773 CAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831 ||| || ||| |||||| ||| || || |||||||| | ||| ||||||||| || | Sbjct 18048 GAAGATATGATCTTTCCAGAGTCTTGAAGCCAAAATACTGGTAATTAAAGTCTCGATCAT 18107 Query 63832 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATC---CATGGTGATAC 63888 ||| || | || || || | | | | || || |||| | || ||| | | | Sbjct 18108 AAACTATCGCGGAATTAAGCTCAGCTTCATGCTTCATAACAGTTTCGTACATAGATTTGC 18167 Query 63889 TTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCA 63948 | || || ||||| |||||||||||| ||||| ||||| | | | | ||| | Sbjct 18168 T---GATCATTGGAGATATTTTCCCATTTTTTGGATTTACATAATGGTAGAGATCAGAGA 18224 Query 63949 TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGG 64008 |||| | ||| ||||||||||| ||||||||||| || || ||||| | || | Sbjct 18225 CAACTTGAGAAAAGGCTTTTTTTGTTTGTTTGTGTAGATTAGAAACAGCTATGCGTGCTG 18284 Query 64009 CTAGAATGGCATAATCCGGATG 64030 | ||||| || || || ||||| Sbjct 18285 CAAGAATAGCGTAGTCGGGATG 18306 >seq388 Length=15577 Score = 214 bits (236), Expect = 2e-50 Identities = 589/910 (65%), Gaps = 56/910 (6%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| ||||| ||||| || ||||| || |||||||||||||| ||||| || || | Sbjct 9267 CATCACTCCGGCCTTTTGATAGTCACCTACTCGTTTTTCGAAAAAGTTAGTCTTCCCAGC 9208 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 ||| || |||||||||||||||||||| ||||| | || || || | ||| | ||| Sbjct 9207 CAAAGAGATATTTTCCATGAAATCAAATGGATTTTTGACTTTGTATACTTTGGAATTTCC 9148 Query 33120 CAATTCAGAAATCAA-TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 || ||| || || ||| || |||||||| || || ||||||| | Sbjct 9147 TAACG-AGAGGAGAAGTCGATCTGCAACGAATTCGATGTACTGCTTCATCAGAGTGGCGT 9089 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| || | || ||| || || |||| |||||||||||||| || || | Sbjct 9088 TCATGCCGAGTAGAGCGCATGGCAGCGCTTCAGTTAGAAATTCTTGTTCTATCTCGACGG 9029 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 33298 | | ||| |||| | ||| | | | | ||| ||| |||||| ||| | Sbjct 9028 CTTGTGTGATAACATCCTGAACAGACTGCTTAGATGGTCTGTGCTTCAAATGTGAAAAGA 8969 Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358 | ||| || || || ||| || || ||||| | ||| |||||||| ||||| | Sbjct 8968 GGAGACAAGCAAAGTCCGTGTGTAGGCCTTCGTCACGTGAAATAAGTTCGTTAGAAAAGG 8909 Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418 | || || | ||| | || || || || | |||||| |||||||| || || ||| | Sbjct 8908 TTAGGCCAGCCATCAACCCTCGTTTCTTCAACCAAAAAATGGAAGCAAAGGAACCACTGA 8849 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCT--GT 33475 | || ||||| || ||||||||||| || | ||| | | |||| | || | || || Sbjct 8848 AAAATATTCCCTCCACTGCAGCAAAAGCTACAAGACGTTGTCCAAATGTCGACTCTTTGT 8789 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA-------TCGTT 33528 | || ||||| ||||| || | ||| || || | |||||| | ||||| Sbjct 8788 CTTGAATCCAACGGACGGCCCAGTCAGACTTTTTCTTAATACAAGGTACTATGAATCGTT 8729 Query 33529 -----------------------------------------TCTATGGCATTAAAGAGAT 33547 || || ||||| || |||| Sbjct 8728 AACGATTATCGCGATAGTGTGGGAAATGGGAATTACTTGTCTCGATAGCATTGAAAAGAT 8669 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | |||||| | |||||| | ||||||||||| ||||| ||| |||| || | Sbjct 8668 AAGTTTTTTGAGCTTGATCTTTTATGTAAGTATCGATTAAAAGCGAATAAGTTTCAGAGT 8609 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | || ||||| || || |||||||| || || |||||||||| | |||||| |||| Sbjct 8608 GGATATTTTCCATCATAATTTGAAATCCATAAAAGAATCTAGCCTCAGGAATCTGCACTT 8549 Query 33668 CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 | | | ||| || || | | |||||||| || || ||||| ||| |||||||| | Sbjct 8548 CACTGCTAAACCGCTCGACGAGGTTTTCATTAACAATCCCGTCTGAGGCGGCAAAAAAGG 8489 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGA 33784 | | ||||| |||||| ||| ||| || | | | ||||||||||| | || Sbjct 8488 CTAGCACATGAGATATAAAGTATCGTTCATCATCATTGAGACGGTTATTCCAATCGTGGA 8429 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 |||||||||| | ||| | || || | |||||||| |||||||| || ||||| |||| Sbjct 8428 TATCTTTAGACAAATCAATCTCCTCAGCAGTCCAAAAAGATGCCTCGGCTTTTTTGTACA 8369 Query 33845 TGTTCCAGAT 33854 | | ||| || Sbjct 8368 TATGCCATAT 8359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622897753566000