Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq649 127 1e-24 seq1181 113 3e-20 >seq649 Length=19467 Score = 127 bits (140), Expect = 1e-24 Identities = 142/188 (76%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||||| |||||||||||| |||||||| ||||||||||| || ||| ||| | || Sbjct 4750 AACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCA--GATAATGTTCGACCATCC 4807 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||||||||| | || || | ||||| ||| |||||||||||||||||| Sbjct 4808 TCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCC 4867 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||||| ||| | || || || ||| ||||| || | |||||||||| Sbjct 4868 TGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGTT 4927 Query 15145 TTACCTGT 15152 ||||| || Sbjct 4928 TTACCAGT 4935 Score = 114 bits (126), Expect = 9e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || ||||| ||||| || || ||||||||||| ||||| ||| Sbjct 5287 CCACCGCGTAAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAA 5346 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || || || || |||||| | ||||| | ||||||||| ||| Sbjct 5347 AGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGG 5406 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||||||||||||| | || |||||||| ||| || Sbjct 5407 ATGCCTTCTTTGTCCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACT 5466 Query 15130 TCTAAGGTAATGGTTTTACCTGT 15152 || | ||| || ||||| || || Sbjct 5467 TCAAGGGTTATAGTTTTGCCAGT 5489 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| || || || || || |||||||||||||||||| | ||| | | | ||||| Sbjct 4238 ACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATCTTCA 4297 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | ||||| | |||||||| |||||| ||||| || || Sbjct 4298 AGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATCTTGG 4357 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||||| || | ||||| ||||| | |||||| || | || || ||||| Sbjct 4358 ATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGTTTTC 4417 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||||| ||||| || ||||| Sbjct 4418 CCAGTCAATGTTTTGACAAATATCTGCAT 4446 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025 ||||||||||| || || ||||| || |||||||| | |||| || ||| | || | Sbjct 4466 ACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGT--CTGATAAAGTTCGGCCATCCT 4523 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | |||||| || || |||| || ||||||||||| ||||||||||| || || Sbjct 4524 CAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCTT 4583 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||||||||| || | || || || || | || || || | ||||| |||| Sbjct 4584 GAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTTT 4643 Query 15146 TACCTGT 15152 |||| || Sbjct 4644 TACCGGT 4650 >seq1181 Length=24886 Score = 113 bits (124), Expect = 3e-20 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 |||||| ||||| |||||||| |||||||| || || ||| || |||| || | | Sbjct 11286 ATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCA--GACAATGTCCGGCCGTCCTCGAGT 11229 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| || || | |||||||| |||||||| |||||| |||||||| || ||| Sbjct 11228 TGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGGATT 11169 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTT-TCTACGTCTAAGGTAATGGTTTTACC 15149 || ||||||| | || || || || | || || || || | ||||| |||||||| Sbjct 11168 TTTGATTTTACATTGTCGATGGTGTC-CGATGACTCCACCTCAAGCGTAATAGTTTTACC 11110 Query 15150 TGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||||||||| Sbjct 11109 CGTGAGGGTTTTCACGAAAATTTGCAT 11083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357364341209750