Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq649 140 7e-28 seq1181 129 1e-24 seq2344 102 2e-16 >seq649 Length=19467 Score = 140 bits (154), Expect = 7e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| |||||||| |||||||| |||| ||| |||| ||||| || | ||| Sbjct 5310 GTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGGCCATCCTCCAACTG 5369 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | || ||||||||||| || |||||||||||||| |||||||| Sbjct 5370 CTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGAATTTT 5429 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || || || || ||| ||||||||||| Sbjct 5430 GCTTTTTACATTGTCGATAGTATCAGATGATTCGACTTCAAGGGT 5474 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| ||||| || || ||||| || | | ||||| ||||| || || || Sbjct 4472 TGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATCCTCAAGTTGT 4531 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| || || | ||| |||||||| |||||||| |||||||| ||||||||||| Sbjct 4532 TTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCTTGAATTTTG 4591 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| ||||||||||| ||| || ||||| || |||| || || || || Sbjct 4592 CTTTTGACGTTATCAATGGTGTCAGAAGACTCGACTTCGAGAGTAATAGTTTTACCGGT 4650 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || || ||||||||||| |||||||| | | |||| ||||| || Sbjct 4750 AACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACCATCCTC 4809 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || || ||||| | || |||||| || || ||||| ||||| ||||| || Sbjct 4810 AAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCCTG 4869 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || || ||||||||||| || || || |||||||||| || || Sbjct 4870 TATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAATGGTTTT 4929 Query 195111 TCCTGT 195116 || || Sbjct 4930 ACCAGT 4935 Score = 100 bits (110), Expect = 6e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || |||||||| || || || || | ||| |||| || || || || || Sbjct 5032 GTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACCGTCCTCAAGTTG 5091 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || |||| |||||| || |||||||| |||||||||||||| ||||| Sbjct 5092 TTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGAGGAATTCCTTCTTTGTCTTGTATTTT 5151 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || || |||||||| || || || || || || | || ||||| || Sbjct 5152 ACTTTTTACATTGTCGATGGTGTCAGACGACTCGACCTCTAGAGTGATGGTTTTTCCAGT 5211 >seq1181 Length=24886 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || |||||||| || ||||| || | | || | || || ||| Sbjct 11291 ACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGGCCGTCCTCG 11232 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | ||||||||||| || ||||||||||| || ||||| Sbjct 11231 AGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGG 11172 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || || || ||||||||||| ||||| ||||| |||| || || Sbjct 11171 ATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAGCGTAATAGTTTTA 11112 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 11111 CCCGTGAGGGTTTTCACGAAAATTTGCAT 11083 >seq2344 Length=7468 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||||||||||||||| | |||||||| |||||||| ||||| ||||| || || || Sbjct 4352 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 4293 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | |||||||| || || || || || ||||| || || || ||| || || || ||| Sbjct 4292 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 4233 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || || | ||| | || || || || | || || ||||| Sbjct 4232 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 4174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109391333270450