Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2786 262 3e-64 seq1181 131 1e-24 seq649 123 2e-22 seq3361 116 3e-20 seq2344 107 2e-17 seq1883 104 2e-16 >seq2786 Length=21599 Score = 262 bits (290), Expect = 3e-64 Identities = 540/799 (68%), Gaps = 7/799 (1%) Strand=Plus/Minus Query 551790 GGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTG 551847 |||||| |||| | || || |||||||| || || |||| || | || | ||| Sbjct 15727 GGAGATACTCACTTGGGAGGAGAAGATTTCGACAACCGACTCGTCAACCAC--TTTGTAA 15670 Query 551848 AAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTC 551907 | || ||||| || ||| |||| ||| ||||| || || | ||| || | |||| Sbjct 15669 ATGAGTTTAAGCGCAAACACAAGAAAGATTTATCTTCAAACGCTAGAGCACTAAGACGTC 15610 Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 | |||| || || ||| |||| |||||| | || || || | | || || | || | Sbjct 15609 TTCGAACCGCATGTGAACGAGCAAAACGAACACTATCCTCATCTGCCCAGACATCCATCG 15550 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 || | |||||| ||||||| || || || | |||| | ||| | | || |||| Sbjct 15549 AAATTGATTCACTATTTGAAGGTATCGACTTCTATACATCCATTACCCGAGCTCGTTTTG 15490 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 | || | || || || || ||| || | | |||||||| | ||| || | Sbjct 15489 AGGAACTCTGCCAAGACCTTTTCAGATCTACCACTACCCCAGTAGATCGTGTTCTAGCTG 15430 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 | | || ||||| ||||| || |||||||| ||||| || ||||||||||| || ||| Sbjct 15429 ACGCCAAAATTGACAAATCAAAGGTACATGAGATTGTTCTAGTTGGTGGATCAACGCGAA 15370 Query 552148 TTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG 552207 |||| | || | || | | | |||||||||||| ||| || ||| || Sbjct 15369 TTCCCAGGATCCAAAAACTTATCACGGATTATTTCAATGGCAAAGAACCCAATAAATCAA 15310 Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 | ||||| ||||| || || || |||||||| || | ||||| || ||| | || || Sbjct 15309 TCAATCCTGATGAAGCAGTAGCTTATGGTGCTGCGGTCCAAGCTGCAATTTTGTCAGGTG 15250 Query 552268 AAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324 | || | | || | ||||| | || |||| | ||||| | || || || || | Sbjct 15249 ATACATCTTCTAAGTCCACAAATGAAATCCTACTACTCGATGTCGCACCACTCTCACTCG 15190 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 | ||||||| | ||| || ||||| || | || |||||| |||||||| || Sbjct 15189 GAATAGAAACCGCTGGTGGGCAGATGACCAAATTGATTCCTAGAAACACTACTATCCCCA 15130 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 ||| || ||| |||||||| || || || || |||||| ||| |||| || ||| Sbjct 15129 CTAAGAAGTCTGAAGTATTTTCAACTTACTCTGACAATCAACCTGGTGTTCTCATACAAG 15070 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 ||||||| || || || || || ||||| || |||| ||||||| ||| | ||| Sbjct 15069 TTTTTGAGGGTGAGCGACAACGAACAAAAGACAACAATCTCCTTGGTAAATTTGAGTTAA 15010 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATG 552564 || ||||| ||||| || ||||| ||||| ||||| || |||||||| ||| | |||| Sbjct 15009 CTGGAATTCCACCTGCCCCACGTGGTGTACCCCAAATAGAGGTTACTTTTGATTTGGATG 14950 Query 552565 CCAATGGAATTTTGAATGT 552583 | || |||||| ||||||| Sbjct 14949 CAAACGGAATTATGAATGT 14931 Score = 251 bits (278), Expect = 6e-61 Identities = 410/588 (70%), Gaps = 2/588 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 |||||||| ||||||||||| ||||| |||||||||| ||| | ||| | | || Sbjct 16378 ATAGGTATCGATTTAGGAACTACATACTCTTGTGTTGGTATTTTCAGAGATGATCGAATT 16319 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| || |||||||| ||||| || ||||||| || || | ||| | || ||||| Sbjct 16318 GAAATCATCGCCAATGACCAAGGAAATCGAACTACACCTTCCTTTGTAGCATTTACGGAT 16259 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||||| ||| |||||||||| || ||| |||||| | | ||||| ||||| || Sbjct 16258 ACTGAACGCTTAATTGGTGATGCTGCTAAAAATCAAGTCGCAATGAATCCAACCAACACA 16199 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 ||||||| || |||||| | || || ||| ||| || | || || | ||| Sbjct 16198 GTTTTTGACGCCAAACGTCTGATAGGCCGAAAGTTTGCCGACCCTGAAGTACAATCTGAT 16139 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACT 550294 |||||||| | || ||| | || || | |||| ||||| || |||| | | Sbjct 16138 ATGAAGCACTTCCCATTCAAGATAGTAGACAAGGCTGGCAAACCAGTCATCGAAGTTG-T 16080 Query 550295 CATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAA 550353 | | || ||| ||||| || |||| ||| |||| || || ||||| | | || Sbjct 16079 CTTCAAAGGAGAGACCAAACAGTTCACACCTGAAGAAATCTCTTCCATGGTACTCACCAA 16020 Query 550354 AATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGT 550413 |||||| | || || || | | | ||| | ||||| |||| || |||| || Sbjct 16019 AATGAAGGAGACGGCAGAGGCGTATCTAGGTACACAAGTTGACAATGCTGTCGTAACAGT 15960 Query 550414 ACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGG 550473 || || || || ||||| || ||| | |||||||| |||||||| || | ||||||||| Sbjct 15959 GCCTGCGTACTTCAATGATTCTCAAAGACAAGCTACCAAAGATGCAGGTCTTATTGCTGG 15900 Query 550474 ACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGA 550533 ||| |||||||| ||||| || ||||| || || |||||||| |||| || || ||||| Sbjct 15899 ACTAAATGTTCTCCGTATCATTAATGAGCCCACAGCTGCTGCTATTGCGTACGGTCTTGA 15840 Query 550534 TAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | || ||| ||||||||||||||||| | ||||| Sbjct 15839 CAAGAAGGTCGAGGGAGAGAGAAATGTACTCATCTTTGACTTAGGAGG 15792 >seq1181 Length=24886 Score = 131 bits (144), Expect = 1e-24 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| ||||| |||||||| ||| |||||| || ||||| |||| | || | Sbjct 11300 AGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTCCGG 11241 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || ||||||||||| |||||||| | | ||| || ||||| ||||| ||||| Sbjct 11240 CCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCCTTCC 11181 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 |||||||| |||||| |||||| || || || || | ||| | || || || || Sbjct 11180 TTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCG-ATGACTCCACCTCAAGCGT 11122 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||||||| || || ||||| |||||||||||||| Sbjct 11121 AATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11083 >seq649 Length=19467 Score = 123 bits (136), Expect = 2e-22 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || | |||||| || |||||| || ||||| || | || |||| Sbjct 4454 CTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTT 4513 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| |||||||||||||| ||||| || | || || || || |||||||||||| Sbjct 4514 CGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCT 4573 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 ||||||||||||||||| ||| || ||||| || |||| || | | |||||| Sbjct 4574 TCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAG-AAGACTCGACTTCGAG 4632 Query 563433 AGTAACAGTTTTACCAGTAA 563452 ||||| ||||||||| |||| Sbjct 4633 AGTAATAGTTTTACCGGTAA 4652 Score = 123 bits (136), Expect = 2e-22 Identities = 147/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || |||||||||||| |||||| ||| |||||||||| || |||| Sbjct 4742 AGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGA 4801 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||||||||| || ||||| || | |||||| ||||| || ||||||||||| Sbjct 4802 CCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCC 4861 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || || || ||||| ||| || ||||| || || | || ||| || || || Sbjct 4862 TTGTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTAC-CTCAAGGGT 4920 Query 563436 AACAGTTTTACCAGTAA 563452 || ||||||||||||| Sbjct 4921 AATGGTTTTACCAGTAA 4937 Score = 100 bits (110), Expect = 2e-15 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 563282 TTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAA 563341 || |||| ||| | |||||||| ||||| | | |||||||||||| ||||| |||| Sbjct 4255 TTCCTTTTGTA-TGTTGTAATCGTTAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAA 4313 Query 563342 AAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTG 563401 | || | |||||| || || || ||||| |||||||||||||| || || ||| || Sbjct 4314 AGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATCTTGGATCTTACTTTTGACGT 4373 Query 563402 CCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTA 563460 || |||||||| | | ||| ||| ||||| | ||||| ||||| | ||||| Sbjct 4374 TGTCTATTGTATCTGAAGATTCTAC-TTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTG 4432 Query 563461 ACGAAAATTTGCAT 563474 || || || ||||| Sbjct 4433 ACAAATATCTGCAT 4446 Score = 100 bits (110), Expect = 2e-15 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | || || || |||||| || || || |||| || |||| Sbjct 5018 AGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGA 5077 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || |||||||||||||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct 5078 CCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGAGGAATTCCTTCT 5137 Query 563377 TTATCTTGAATTTTTTGTTTTAC 563399 || ||||| ||||| |||||| Sbjct 5138 TTGTCTTGTATTTTACTTTTTAC 5160 >seq3361 Length=29292 Score = 116 bits (128), Expect = 3e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || ||||||| ||||||| || ||||| |||||||| || | ||||||| Sbjct 5393 AAGTCACTCATGCAGTTGTAACTGTTCCTGCATACTTTAATGATAATCAGAGACAAGCTA 5452 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 |||||||||| ||| || ||||| ||||| || || |||||| | |||||||| |||| Sbjct 5453 CTAAAGATGCCGGAACCATAGCTGGCCTTAACGTACTCCGTATTGTGAATGAACCAACTG 5512 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 | || || |||| || || ||||||||| Sbjct 5513 CGGCAGCTATTGCGTACGGTCTTGATAAA 5541 Score = 96.9 bits (106), Expect = 3e-14 Identities = 122/167 (73%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045 |||||| || || || ||| | || ||||||||| |||||||||||| |||||| Sbjct 4940 AAAGTA---ATTGGAATTGATCTTGGCACCACATATTCTTGTGTTGGTGTAATGCAAAAA 4996 Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || |||||||| ||| | | ||||| ||||| || ||| ||||| || ||||| || Sbjct 4997 GGCAAAGTTGAGATTTTAGTTAATGACCAAGGAAATCGAATCACTCCCTCATATGTCGCT 5056 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC 550152 || || || ||| | ||||||| ||||| |||||| | || || Sbjct 5057 TTTACCGACGATGAGCGCCTAGTTGGAGATGCGGCAAAAAACCAGGC 5103 >seq2344 Length=7468 Score = 107 bits (118), Expect = 2e-17 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 563279 TACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGG 563338 |||| |||| | |||||||||||||| ||||||| | ||||||||| ||||| || | Sbjct 4359 TACTACCTTTTG-AATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAG 4301 Query 563339 CAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTA 563398 |||| || | | ||| |||||||| || ||||| |||||||| || || ||| ||| | Sbjct 4300 CAAATATCAAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCA 4241 Query 563399 CTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTT 563457 | |||||||| |||| | || | | || | || | |||||| ||||| || || Sbjct 4240 CATTATCAATTGTGTCAGAG-GACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTC 4182 Query 563458 TTAACGAA 563465 || ||||| Sbjct 4181 TTGACGAA 4174 >seq1883 Length=24809 Score = 104 bits (114), Expect = 2e-16 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||||| |||| || ||||||| ||||||||||| ||||| ||||| || |||||||| Sbjct 14662 AGTTAAAAATGCCGTTGTAACTGTTCCAGCATATTTCAATGATTCACAGCGACAAGCTAC 14603 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 |||||||||||| | || ||||| | ||| || ||| || | ||||| || ||||| Sbjct 14602 TAAAGATGCTGGTCAAATAGCTGGCTTGTCTGTACTACGTGTTGTAAATGAGCCAACTGC 14543 Query 550510 TGCTGCACTTGCATATGGACTTGATAAACATAATGAT 550546 ||||| | || || || | || ||| || | ||| Sbjct 14542 AGCTGCTTTAGCCTACGGCTTGGAAAAAGATGAAGAT 14506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028960183361500