Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq649 167 2e-36 seq1181 147 2e-30 seq2344 111 1e-19 >seq649 Length=19467 Score = 167 bits (184), Expect = 2e-36 Identities = 160/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | |||||||| ||||| ||||| || |||||||||||||||||||| |||| Sbjct 5285 TTCCACCGCGTAAACGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGG 5344 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||| | |||| ||||| ||||| || || || ||||| | |||||| || || | Sbjct 5345 AAAGTGTTCGGCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTG 5404 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||||||||| || |||||||| ||||||| | || | ||| ||||| | ||| | Sbjct 5405 GGATGCCTTCTTTGTCCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGA 5464 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| || | |||||||| || Sbjct 5465 CTTCAAGGGTTATAGTTTTGCCAGT 5489 Score = 159 bits (176), Expect = 3e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||||| ||| | ||||||||||| || |||||||| || || ||||| || | Sbjct 4448 CCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 4507 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | |||| || | ||| || ||||||||||| || |||||||| || || ||| Sbjct 4508 AAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGA 4567 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||||||||| ||| || | || | |||||||| | || ||| Sbjct 4568 ATTCCTTCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGACT 4627 Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445 || ||||| | ||||| ||||| Sbjct 4628 TCGAGAGTAATAGTTTTACCGGT 4650 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || || || ||||| |||||||| ||||||||| | ||| | |||| || Sbjct 4238 ACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCCATCTTCA 4297 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| ||||| | ||||| || || ||||| |||||||||||||| Sbjct 4298 AGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTTATCTTGG 4357 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | |||| || || || | ||| ||||||||||| | ||||| Sbjct 4358 ATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTATTGTTTTC 4417 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||||||||| Sbjct 4418 CCAGTCAATGTTTTGACAAATATCTGCATG 4447 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||||| ||||||||||||||||||||| || |||||||| | | |||| | Sbjct 4744 ACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGTTCGACC 4803 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||| || || ||||| || || | ||||||||||| ||||| ||||| || Sbjct 4804 ATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTT 4863 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || ||||| ||| ||| | || | ||||| || | || || ||||| || | Sbjct 4864 GTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAGGGTAAT 4923 Query 101434 CGTTTTGCCGGT 101445 ||||| || || Sbjct 4924 GGTTTTACCAGT 4935 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || ||||||||||| || || || || | | |||| | || || Sbjct 5027 ACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACCGTCCTCA 5086 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || ||||| || | | ||||||||||| ||||| |||||||| ||||| Sbjct 5087 AGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGAGGAATTCCTTCTTTGTCTTGT 5146 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||||| | || | |||||||||| || || || ||||||| ||||| Sbjct 5147 ATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCGACCTCTAGAGTGATGGTTTTT 5206 Query 101441 CCGGT 101445 || || Sbjct 5207 CCAGT 5211 >seq1181 Length=24886 Score = 147 bits (162), Expect = 2e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | | ||| | || | |||||| |||||||||||||| || ||||| || | Sbjct 11310 TCCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGA 11251 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | | | || || | ||| || || ||||| |||||||| ||||| || || || Sbjct 11250 CAATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGG 11191 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||||||||| |||||||| |||||| ||||||| | || | ||||| || | ||||| Sbjct 11190 AATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCAC 11131 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTAC 101475 ||||| || | ||||| || || | ||||| || || || |||||| |||| Sbjct 11130 CTCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCATGATTAC 11077 >seq2344 Length=7468 Score = 111 bits (122), Expect = 1e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| ||||||||||| | | ||||| |||| || | || ||||| ||||||||| Sbjct 4352 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 4293 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 ||||| |||||||| || || || || |||||||| || || ||| ||| ||| | || Sbjct 4292 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 4233 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||| | || || || | |||| |||||||| |||| || || || || Sbjct 4232 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 4174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396247731766950