Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq492 203 4e-47 seq307 84.2 3e-11 >seq492 Length=50397 Score = 203 bits (224), Expect = 4e-47 Identities = 961/1500 (64%), Gaps = 59/1500 (4%) Strand=Plus/Minus Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || |||||||| | ||| |||||||| | || ||||| || || || || || || Sbjct 17727 GGAACAAATGGAAACTCAAATGGTATTGTACCGATGCTCCGAGTCTTCAATAATACTGCC 17668 Query 75563 CGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAA 75616 | ||||| |||||| || ||||| ||| | |||| | || ||||| Sbjct 17667 AGATATGTTGATCAAGGTGGTAATAAGCGTCC---GGGAGCATTCGCTATATATTTGGAG 17611 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 |||||||| |||||||| | |||||||| || | || || || || | ||||| Sbjct 17610 CCATGGCACGCCGATATATTTGAGTTCCTCGACCTCCGCAAAAATCACGGCAAAGAAGAA 17551 Query 75677 GCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | ||| || | | ||||| || | |||| ||||| || || || || |||||| | || Sbjct 17550 GTTCG-TGCACGTGATCTATTCTATGCCCTTTGGATACCTGATCTCTTTATGAAGAGAGT 17492 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCA-GACAAGGCACCAGGTCTCTCCGACG 75794 ||| | |||| ||||| | || | || || | || | || ||||| | || | Sbjct 17491 TGAAAAAAATGGTGAATGGACCCTGATGTGCCCTTGTGAATGT-CCTGGTCTAGCTGATG 17433 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 | || || || ||||| || | || |||||||||| | || || | || | | Sbjct 17432 TGTATGGCGATGAATTTGAGGCTTTATATGAAAAGTATGAACAAGAAGGGAAAGGCCGTA 17373 Query 75855 CGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 ||| | || | | ||| | | || || || |||| || || ||||| | Sbjct 17372 GAACTATTATGGCACAAAAGCTATGGTACTCAATAATCGAAGCACAAACAGAAACTGGTA 17313 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 | || | |||||| ||||| ||||| ||||| || ||||| || ||||| ||| | || | Sbjct 17312 CCCCTTTTATGCTCTACAAAGATGCATGTAATAAAAAGAGCAATCAAAAAAATCTCGGGA 17253 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | ||| ||||| |||||||| || |||||| | || ||| || | |||||| || Sbjct 17252 CTATCCGTAGCTCTAATCTTTGTACCGAAATTGTTGAATACTCATCTCCGGATGAAGTGG 17193 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 ||||||| ||||||||||| | || | || | ||||| ||| || | |||| Sbjct 17192 CTGTTTGTAATTTGGCATCCCTAGCTTTGCCGACCTATGTTAATACAGCTGATAATACTT 17133 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 |||||| | | ||||||||||| || || |||| | ||||| || | ||| Sbjct 17132 TTGATTTTCACAAACTTCATGATGTCTGTCAGGTTGTAGTTAGGAATCTGAATAAAATCA 17073 Query 76155 TTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 |||| |||| ||||| || ||| || || ||| ||| | || ||| ||| Sbjct 17072 TTGATGTTAATTACTATCCTGTGCCTGA---AGCTCGTAAGAGCAATTTACGCCACCGAC 17016 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT---TTTGTGCCGCTACGCAT 76268 | || | | |||| |||||||| || || ||||| ||| | |||| |||| ||| Sbjct 17015 CAATAGCTGTGGGAGTTCAAGGGCTAGCAGATGTGTTTTTGGCTTTG---CGCTTGCCAT 16959 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 | || || || || || | | || | |||||||||||||| ||||| ||| Sbjct 16958 TCGACTCTCCAGAGGCAAAACATCTCAACAAACAGATCTTTGAAACCATATATCATGCAG 16899 Query 76329 CCCTGGAGGC--GAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 | || | ||| ||| || || || | |||| | || ||||| | ||||| Sbjct 16898 CTCTAACATCTTCAGT--TGACTTAGCCAAAAAACTAGGTACATACGAGACTTACGAGGG 16841 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAAC--CAAGCTC 76444 || ||||| || || | |||||| | |||||||||| | | | | || || Sbjct 16840 CTCCCCCGCCTCGATGGGTGAGCTTCAATACGATATGTGGGGCGTTACACCTACAGACTT 16781 Query 76445 AACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | | || |||||| | | |||| || | | | || ||||| || || | Sbjct 16780 A--TGGGATTGGGATTCTTTAAAGGCTGAAATTAGGATTTATGGCCTTCGGAATAGCTTA 16723 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTT 76563 | | || ||||||||||| || || |||| |||||| | |||||| || || Sbjct 16722 CTCGTAGCCCCAATGCCAACCGCAAGTACAAGTCAAATTCTTGGAT-TTAATGAGTGTTT 16664 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 ||| ||||| || | || || ||| | | | ||||| |||||| ||||| Sbjct 16663 TGAGCCATATACCTCTAATATATACTCACGCCGTGTTTTAGCAGGAGAGTTTCAAATTGT 16604 Query 76624 CAACAAGCACCTCG----TCAATGACCTCAAGAAGAT-TGGTC-TCTGGTCCAAGGATAT 76677 || ||| | |||| || || | |||| ||| | | ||||| | | || Sbjct 16603 ----AAATCCCTGGTTACTCAAAGA--TCTGGTAGATATGGGCTTATGGTCTGATAACAT 16550 Query 76678 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737 ||| ||| ||| | | || || || ||||| ||||| ||| |||| |||| || Sbjct 16549 GAAAAATCGCATCATATCTGATGGAGGCTCTATTCAGAATATATCAAATATTCCAGCCGA 16490 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATG 76795 || || |||||| ||||| ||||| | ||| | | | | ||| | ||| Sbjct 16489 AATTAAAGCACTCTACAAAACAGTTTGGGAGATCTCACAGCGCACCA--TAATTCAGATG 16432 Query 76796 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCA-TGGAA 76852 || || ||||||||| || ||||||| ||||| ||| ||||| |||||| | ||| Sbjct 16431 GCTGCTGATCGTGGTGCATTTATTGATC--AGTCACAGTCAATGAA--TATTCACTTGAA 16376 Query 76853 AG-TCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAA 76911 || ||||| ||| ||| | | ||||||| | | |||||| || | || Sbjct 16375 AGACCCAACTATGGGCAAAATAACAAGTATGCATTTTGCTGGATGGAAATTAGGCTTAAA 16316 Query 76912 AACCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCAGCCTTGA 76971 ||| || |||||||| || || | | ||| | | || |||||||||| | |||| Sbjct 16315 AACTGGCATGTACTACCTACGTACTATGGCTGCATCTGCTCCTATTCAGTTCACCGTTGA 16256 >seq307 Length=22549 Score = 84.2 bits (92), Expect = 3e-11 Identities = 271/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||||| || || || || || |||| | || ||||| || || || || || Sbjct 9313 GGTGCCAAAATACCACGTGGTGCTATTCTTTCCGGACCACCAGGAACTGGGAAAACACTT 9254 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTC-TGCCGCAAA 175394 | || ||| | || || || ||| | || |||||| || |||| || | | Sbjct 9253 TTAGCTAAAGCTACGGCAGGCGAGTCACAAGTACCATTCTTC-AGTGTAAGTGGATCTGA 9195 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||| |||||||||||||| || |||||| | | ||||||||||| || | | || Sbjct 9194 ATTTGTAGAGATGTTTGTTGGCGTCGGTGCCTCACGAGTTCGCGATCTTTTCGCAGAAGC 9135 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 || |||| |||||||||| | || || ||||| || ||||| | ||||| || Sbjct 9134 TCGTAAAAACACACCATGTATTATTTTTATAGATGAAATCGATGCCATTGGCAAATCTCG 9075 Query 175515 CAGC--GCT--GGTGGTATG--CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568 | || | | ||| | || | |||||| || ||||| || | ||||| | Sbjct 9074 CGGCAAGGTTGGGTCATTTGGTGGTGGAAATGATGAAAGAGAGGCTACCTTAAATCAGAT 9015 Query 175569 ACTCACCGAGATGGATGGCTTTGACAATGAGACTG-GCA--TTGTGGTTATTGCGGCCAC 175625 | | || || |||||||| || |||| ||| ||| |||| ||| | || | ||| Sbjct 9014 ATTAACTGAAATGGATGGATT---CAATACCTCTGAGCAAGTTGTTGTTCTCGCAGGCAC 8958 Query 175626 TAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 |||| | ||| | |||||| | || | | || || ||||| |||||| Sbjct 8957 TAATAGACCAGATGTACTTGATAAAGCTTTAATGCGTCCCGGTCGATTTGAT 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596522247288000