Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq649 158 2e-33 seq1181 122 2e-22 seq2344 102 1e-16 >seq649 Length=19467 Score = 158 bits (174), Expect = 2e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | ||||| || | ||| | || || || || ||||| | Sbjct 4219 ACCACCGCGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATC-GT 4277 Query 171902 TAA-AGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 ||| || ||| | || || | ||| || |||||||| || ||||| |||||||| |||| Sbjct 4278 TAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTG 4337 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || |||||||||||||| || ||| |||| || || ||| |||||||| ||||||| Sbjct 4338 GAATACCTTCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTA 4397 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| || ||||| ||||| |||||||| | ||||||||||| Sbjct 4398 CTTCAAGAGTTATTGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4446 Score = 156 bits (172), Expect = 8e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | |||| ||| | |||| ||||| ||| || ||||| Sbjct 4730 ATACCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCA 4789 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | ||| | || || | |||||| |||||||| |||||||| ||||| || ||| Sbjct 4790 GATAATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGT 4849 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || ||||||||| |||| |||||| || || || || || ||| Sbjct 4850 GGAATTCCTTCCTTGTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCT 4909 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT 172045 || || || ||||||||||||||||| Sbjct 4910 ACCTCAAGGGTAATGGTTTTACCAGT 4935 Score = 147 bits (162), Expect = 4e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | |||||||| | ||| | ||||| || || || ||| Sbjct 4445 ATGCCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCT 4504 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| ||| | || || | |||||| || ||||| ||||||| ||||||||| || Sbjct 4505 GATAAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGA 4564 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| |||| || ||| || || || || || || Sbjct 4565 GGAATTCCTTCTTTATCTTGAATTTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCG 4624 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTT 172053 ||||| |||||||| |||||||| || | | ||| Sbjct 4625 ACTTCGAGAGTAATAGTTTTACCGGTAACTATTT 4658 Score = 138 bits (152), Expect = 2e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | ||||| || ||||| || Sbjct 5006 ATGCCACCACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCA 5065 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| || | |||||| ||||||||||||| ||| ||||| || || Sbjct 5066 GAAAGTGTTCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGA 5125 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| |||||||||||| |||||||||| || || || ||||| || Sbjct 5126 GGAATTCCTTCTTTGTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCG 5185 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT 172045 || |||||||| |||||||| ||||| Sbjct 5186 ACCTCTAGAGTGATGGTTTTTCCAGT 5211 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 |||| ||||| || | ||| | ||||| ||||| || || || | | ||| | Sbjct 5299 CGTAGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGGCCA 5358 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || || ||||| ||||| |||||||||||||| ||||| || |||||||| Sbjct 5359 TCCTCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATGCCTTCTTTG 5418 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| |||||||||| |||||||| || ||||| ||||| || || || Sbjct 5419 TCCTGAATTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACTTCAAGGGTTATA 5478 Query 172035 GTTTTACCAGT 172045 ||||| ||||| Sbjct 5479 GTTTTGCCAGT 5489 >seq1181 Length=24886 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| || | ||| | ||| | ||||| ||||| || || || || || Sbjct 11309 CCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 11250 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || |||| || | |||||| || |||||||| || | |||||||||||||| Sbjct 11249 AATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGA 11190 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| |||||||| ||||| ||||||||| || || || || || || || Sbjct 11189 ATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACC 11130 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| || | ||||| | ||| || ||||| Sbjct 11129 TCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11083 >seq2344 Length=7468 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| || | || |||| | || || | |||||||||||||| || || | Sbjct 4347 AATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATCAAACG 4288 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| ||||| || ||||| |||||||| || || || ||| |||||| || || Sbjct 4287 TTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCAATTGT 4228 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || || || || || |||| || || ||||| ||||||| || || | ||| Sbjct 4227 GTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 4174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905064154830000