Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq492 174 5e-38 seq388 131 5e-25 seq307 102 2e-16 seq1391 87.8 5e-12 >seq492 Length=50397 Score = 174 bits (192), Expect = 5e-38 Identities = 395/589 (67%), Gaps = 5/589 (1%) Strand=Plus/Plus Query 155915 CTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTC 155974 || |||||| | |||| ||||| |||||||| || || | ||| || || Sbjct 17497 CTTCATAAAGAGATCAGGTATCCAAAGGGCATAGAATAGATCACGTGCACGAACTTCTTC 17556 Query 155975 ATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAG 156034 | ||||||||| || || || || | ||| || ||||| | || |||||||| Sbjct 17557 TTTGCCGTGATTTTTGCGGAGGTCGAGGAACTCAAATATATCGGCGTGCCATGGCTCCAA 17616 Query 156035 ATACATAGCAAAA-CTACC--ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTT 156091 ||| ||||| || || || | | | || ||||| ||||| ||||| | ||||| || Sbjct 17617 ATATATAGCGAATGCTCCCGGACGCTTATTACCACCTTGATCAACATATCTGGCAGTATT 17676 Query 156092 ATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATAT 156150 ||||||||| | ||||| || | ||||||||| || | ||||| ||||| ||| |||| Sbjct 17677 ATTGAAGACTCGGAGCATCGGTACAATACCATTTGAGTTTCCATTTGTTCCTGCG-ATAT 17735 Query 156151 GCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAA 156210 | ||| | | ||||| |||||||| || ||||||||||| | |||||||| Sbjct 17736 AAGCACCTGTCGCGCGAATCCGATGAATATTTAAGCCAATACCACCGGCATTTTTAGAAA 17795 Query 156211 TTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATA 156270 | |||||| || | ||||| | | || || |||||| ||| |||| ||| | Sbjct 17796 TCATAGCGCAAGTTTTCAAAGTATCGTAGATTCCATCAATACTATCCTCTTTCATATCAA 17855 Query 156271 GTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTG 156330 || | |||| ||| | ||||| | |||| || || || ||||| ||||| | | Sbjct 17856 TTAAAAAGCATGAAGAGAGTTGAGATTGTGGAGTACCGGCTGCAAATAGAGTAGGGGAAG 17915 Query 156331 CATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAG 156390 |||| |||| || ||||| ||||| || || ||||| || |||| | | Sbjct 17916 CATGCGTAAAGTATTTATTGGACATTAGATTATAAGTCTCTATAGCAGATTCAATGTCAT 17975 Query 156391 ACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTC 156450 |||||| | | || ||| | ||| |||||| || || ||||| ||||| Sbjct 17976 CTTGGTGAATTCCAACAGCGACACGCATTATCATATGTTGTGGCCGCTCCACAATTTTAT 18035 Query 156451 CATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| | || ||||| |||| | ||||||||| || || || ||||| Sbjct 18036 CATTGAGGCGAAGAAGATATGATCTTTCCAGAGTCTTGAAGCCAAAATA 18084 >seq388 Length=15577 Score = 131 bits (144), Expect = 5e-25 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGAC-AAGCGTGCGAG 133497 ||||||||||| || || ||||||||||| | ||||| || ||| ||| || ||| Sbjct 8743 CCTTGTATTAAGAAAAAGTCTGACTGGGCCGTCCGTTGGATTCAAGACAAAGAGT-CGAC 8801 Query 133498 TTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTT 133557 |||| ||||| || |||||||||| ||| ||||| || |||||||||||| | || Sbjct 8802 ATTTGGACAACGTCTTGTAGCTTTTGCTGCAGTGGAGGGAATATTTTTCAGTGGTTCCTT 8861 Query 133558 CTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 ||| || ||||||||| | || || || || | | |||| || |||||||||| Sbjct 8862 -TGCTTCCATTTTTTGGTTGAAGAAACGAGGGTTGATGGCTGGCCTAACCTTTTCTAACG 8920 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||||||||||| | ||||| | || ||||| || ||||| Sbjct 8921 AACTTATTTCACGTGACGAAGGCCTACACACGGACTTTGC 8960 >seq307 Length=22549 Score = 102 bits (112), Expect = 2e-16 Identities = 327/502 (65%), Gaps = 4/502 (1%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||| | ||| |||| ||| || | || ||| | ||| || || || Sbjct 8904 CTATCAAATCGACCGGGACGCATTAAAGCTTTATCAAGTACATCTGGTCTATTAGTGCCT 8963 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || | ||||||| || | || ||||||||||| ||||| || ||||| Sbjct 8964 GCGAGAACAACAACTTGCTCAGAGGTATTGAATCCATCCATTTCAGTTAATATCTGATTT 9023 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAA-TCGCTCCttttttt 289028 | || || |||||||||||| ||| | ||| |||| | | || | ||| Sbjct 9024 AAGGTAGCCTCTCTTTCATCATTTCCACCACCA-AATGACCCAACCTTGCCGCGAGATTT 9082 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||| ||||| ||||| || || ||||| | ||| || | |||| | || ||| Sbjct 9083 GCCAATGGCATCGATTTCATCTATAAAAATAATACATGGTGTGTTTTTACGAGCTTCTGC 9142 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | || || || || || | |||||| |||| |||||||||||||| | Sbjct 9143 GAAAAGATCGCGAACTCGTGAGGCACCGACGCCAACAAACATCTCTACAAATTCAGATCC 9202 Query 289149 GGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| |||| ||||| ||| | || |||||||| || | || | |||||| | Sbjct 9203 ACTTACACTGAA-GAATGGTACTTGTGACTCGCCTGCCGTAGCTTTAGCTAAAAGTGTTT 9261 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || ||||| |||||||| | | | | || ||||| ||| || || | || Sbjct 9262 TCCCAGTTCCTGGTGGTCCGGAAAGAATAGCACCACGTGGTATTTTGGCACCGAGACGCT 9321 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 || |||| || |||| | || |||| |||| | ||| |||||| |||| Sbjct 9322 CGAATGTCTCCGGTGTCTTCAGGAACGAAACAAATTCCATGATTTCTAGTTTTGCTTCAT 9381 Query 289328 CACATCCTGCTACATCAGCAAA 289349 | |||||| ||||| ||||| Sbjct 9382 CCATTCCTGCAACATCGGCAAA 9403 >seq1391 Length=34946 Score = 87.8 bits (96), Expect = 5e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| || ||||| |||||||| ||||||||||| | ||||| || Sbjct 10175 TGAATATATCCAGTCTCAGCAGTTTTGACAGCTGTGTCAATTAGACCTTCTCGACCGGCC 10234 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||| |||||||| | || ||| || || | || | | || | ||||| || Sbjct 10235 ATAGCGTGGAAGAAAAATTCAGTAGGTGTGAGACCGCGAAGATAAGAATTTTCAACAAAT 10294 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 || || | || || || | ||| || ||||| ||||| | ||| | | | | | Sbjct 10295 CCGCGTGATTCAGGAGAGTAATCGTCTTTTGTAAAATGTGGTAAGGTTCGATATTTAAAT 10354 Query 302779 CCGTATGGGATACGCTTTCCATCAAC 302804 ||| ||||||| ||||| || ||||| Sbjct 10355 CCGAATGGGATTCGCTTCCCTTCAAC 10380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471697853839950