Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq649 168 1e-36 seq2344 120 6e-22 seq1181 116 7e-21 >seq649 Length=19467 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||||||| ||||| ||||| || ||||| || ||||| ||| | | || Sbjct 4231 ACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTACGTCC 4290 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| |||||||||||||| | ||||||||| || || || || ||||| || Sbjct 4291 ATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCTTCTTT 4350 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| ||| || || || || ||||| || ||||||||| | |||||| Sbjct 4351 ATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGAGTTAT 4410 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || |||||||||||||| Sbjct 4411 TGTTTTCCCAGTCAATGTTTTGACAAATATCTGCAT 4446 Score = 154 bits (170), Expect = 3e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || ||||| || ||||| ||||||||||| || || || || ||| Sbjct 4448 CCTCCTCTTAGACGAAGCACTAAATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 4507 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||| || || || ||||||||||| ||||| |||| || ||||| || ||||| Sbjct 4508 AAAGTTCGGCCATCCTCAAGTTGTTTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGA 4567 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| ||||||||||| ||||||||| || || ||||| || ||| || || || Sbjct 4568 ATTCCTTCTTTATCTTGAAT-TTTGCTTTTGACGTTATCAATGGTGTCAGAAGACTCGAC 4626 Query 82763 TTCCAAAGTTATCGTCTTGCCTGT 82786 ||| | ||| || || || || || Sbjct 4627 TTCGAGAGTAATAGTTTTACCGGT 4650 Score = 149 bits (164), Expect = 1e-30 Identities = 127/157 (81%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || |||||||| || || ||||| ||||| || ||| ||| Sbjct 5020 ACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGTTCGACC 5079 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || ||||||||||||||||| ||||||||||||||||| ||||| |||||||| || Sbjct 5080 GTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGAGGAATTCCTTCTTT 5139 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 ||||| || || ||||||||| || || || ||| Sbjct 5140 GTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCA 5176 Score = 141 bits (156), Expect = 2e-28 Identities = 135/170 (79%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||| || || ||||||||||| || || || ||||||| Sbjct 4731 TACCACCACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAG 4790 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||| ||| || || |||||||| ||||||||||||| |||||||||||| || | Sbjct 4791 ATAATGTTCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTG 4850 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATC 82750 | ||||||||||| || || || ||| ||||| ||||| ||||| || || Sbjct 4851 GAATTCCTTCCTTGTCCTGTAT-TTTACTTTTCACATTATCAATGGTGTC 4899 >seq2344 Length=7468 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || ||||| |||||||| ||| ||| || ||||| || ||||| |||||||| || Sbjct 4352 TTTTGAATATTGTAATCAGAAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAATATC 4293 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | ||||||||| || || ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 4292 AAACGTTGTTGATCAGGGGGGATTCCCTCTTTATCCTGGATCTTTGCTTTCACATTATCA 4233 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || || ||| | || || || || || || || ||||| || | ||||| || || Sbjct 4232 ATTGTGTCAGAGGACTCAACCTCTAAGGTGATAGTTTTGCCAGTTAGGGTCTTGACGAA 4174 >seq1181 Length=24886 Score = 116 bits (128), Expect = 7e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || |||||||||||||| || || || || ||||| Sbjct 11309 CCTCCACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 11250 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || ||||||||||| ||||| || | | |||||| || || || Sbjct 11249 AATGTCCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGA 11190 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||| || |||| ||||||||| || || || || | || || Sbjct 11189 ATGCCTTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACC 11130 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || | || || || || || || | || || || || || ||||| |||| Sbjct 11129 TCAAGCGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCATGATTA 11078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981747319152650