Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1181 150 2e-31 seq649 149 7e-31 seq2344 113 5e-20 >seq1181 Length=24886 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || || || || || || || || |||||||| |||||||| |||||| Sbjct 11080 ATCATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCA 11139 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | || | ||||| || || ||||| || ||||| || ||| Sbjct 11140 TCGGACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGAC 11199 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||| | |||||||| || || ||||||||||| | || || | | ||||| Sbjct 11200 CAACAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTAC 11259 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||||| ||||| ||||||||||| || | |||||||| || ||| Sbjct 11260 AACATCCAAAAAGAATCTACTCTTCATCTCGTACTTCGTCTTCGTGGAGGA 11310 >seq649 Length=19467 Score = 149 bits (164), Expect = 7e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 |||| || || || ||||| |||||||| |||||| || | ||||| ||| |||| Sbjct 4937 TTACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAA 4878 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||| ||||||||||| |||||||| || || || || | |||| |||||||| | Sbjct 4877 GTAAAATACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCA 4818 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 | ||||| ||||||| ||| || || | || || || | ||||| ||||| || |||| Sbjct 4817 AACAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTC 4758 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| | |||||||| ||||| Sbjct 4757 ATCTAGTTCTCCGTCTTCGTGGTGG 4733 Score = 141 bits (156), Expect = 1e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||| || ||||||||||| || || ||||| ||| | ||||| || | || Sbjct 4652 TTACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAA 4593 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || || || ||||||||||| ||||| ||||| |||| ||||| || | Sbjct 4592 GCAAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAA 4533 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 | ||||| ||||||| || || || ||||||| || |||| || ||||||||||||| Sbjct 4532 AACAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTC 4473 Query 27608 ATCTAGTCTTGCGTCT 27623 || |||| | ||||| Sbjct 4472 ATTTAGTGCTTCGTCT 4457 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 |||| ||||| ||||| || ||||| || || ||| ||||| || | ||| | || Sbjct 5491 TTACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAA 5432 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||||||||| || || || || |||||||| ||| | | ||||| ||||| | Sbjct 5431 GCAAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAA 5372 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| | ||||||| || || || | ||||| ||| | ||||| ||||||||||||| Sbjct 5371 AGCAGTTGGAGGATGGCCGAACACTTTCCGACTACAATATACAAAAAGAATCCACTCTTC 5312 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| | ||| | ||||||||| Sbjct 5311 ACTTAGTCCTACGTTTACGCGGTGGA 5286 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || || || || ||||| ||||| ||||| ||| | ||| | ||| | || | Sbjct 5211 ACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAAGT 5152 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || ||||| || ||||||||||| || || || | |||||||||||||| || Sbjct 5151 AAAATACAAGACAAAGAAGGAATTCCTCCCGATCAACAAAGACTAATTTTTGCTGGAAAA 5092 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||| | ||| || || | |||||||| ||||||| ||||| || || || Sbjct 5091 CAACTTGAGGACGGTCGAACACTTTCTGACTATAACATCCAAAAAGAATCGACACTCCAC 5032 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | |||||||| ||||| Sbjct 5031 TTGGTCCTTCGTCTTCGTGGTGG 5009 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || | || || || || || |||||||| || || || Sbjct 4446 ATGCAGATATTTGTCAAAACATTGACTGGGAAAACAATAACTCTTGAAGTAGAATCTTCA 4387 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | || ||| || || || || || || ||||| || ||||| Sbjct 4386 GATACAATAGACAACGTCAAAAGTAAGATCCAAGATAAAGAAGGTATTCCACCGGACCAA 4327 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || |||||||| |||||||| || |||| ||||| || || || || Sbjct 4326 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTAACGATTACAAC 4267 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | ||||||||||| ||||| || |||| | |||||||||||||| || Sbjct 4266 ATACAAAAGGAATCGACTCTCCACTTAGTGCTTCGTCTTCGCGGTGGTCA 4217 >seq2344 Length=7468 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || ||||| ||||| || | ||||||||||| ||| | || Sbjct 4173 CTTCGTCAAGACCCTAACTGGCAAAACTATCACCTTAGAGGTTGAGTCCTCTGACACAAT 4232 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| |||| || || || ||||| || |||||||| || || || || || ||| | Sbjct 4233 TGATAATGTGAAAGCAAAGATCCAGGATAAAGAGGGAATCCCCCCTGATCAACAACGTTT 4292 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || ||||||||||| || || || |||| || || || | || || ||| | ||||| Sbjct 4293 GATATTTGCTGGTAAACAGCTTGAAGATGGACGAACTCTTTCTGATTACAATATTCAAAA 4352 Query 27594 GG 27595 || Sbjct 4353 GG 4354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570265131612000