Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1181 122 6e-23 seq649 118 7e-22 >seq1181 Length=24886 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||||||||||| ||||| || || || || || || || || Sbjct 11083 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACGCTTGAGGTGGAGTCATCG 11142 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| |||||| || || ||||| | || || || ||| Sbjct 11143 GACACCATCGACAATGTAAAATCAAAAATCCAAGATAAGGAAGGCATTCCACCTGACCAA 11202 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || |||||||| || |||| || || || || |||||| Sbjct 11203 CAACGTTTGATTTTTGCGGGAAAACAACTCGAGGACGGCCGGACATTGTCTGACTACAAC 11262 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 11263 ATCCAAAAAGAATCTAC 11279 >seq649 Length=19467 Score = 118 bits (130), Expect = 7e-22 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| || ||||||||||| || || | ||||| |||| | | ||| Sbjct 4650 ACCGGTAAAACTATTACTCTCGAAGTCGAGTCTTCTGACACCATTGATAACGTCAAAAGC 4591 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| || |||||||| | || || || |||||||| ||||||||||| || ||| Sbjct 4590 AAAATTCAAGATAAAGAAGGAATTCCTCCGGACCAACAGCGATTAATATTTGCAGGAAAA 4531 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||||| || || | || |||||| || |||||||| || ||||| ||||| | ||| Sbjct 4530 CAACTTGAGGATGGCCGAACTTTATCAGACTACAACATCCAGAAAGAATCCACTCTTCAT 4471 Query 23815 TTAGT 23819 ||||| Sbjct 4470 TTAGT 4466 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| || ||||| ||||| || || | Sbjct 4446 ATGCAGATATTTGTCAAAACATTGACTGGGAAAACAATAACTCTTGAAGTAGAATCTTCA 4387 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| || || || ||||||||| | || || || ||| Sbjct 4386 GATACAATAGACAACGTCAAAAGTAAGATCCAAGATAAAGAAGGTATTCCACCGGACCAA 4327 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || || ||||| ||||| | ||| ||| | |||||||||| Sbjct 4326 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTAACGATTACAAC 4267 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||||| || || || | || ||||| Sbjct 4266 ATACAAAAGGAATCGACTCTCCACTTAGT 4238 Score = 96.9 bits (106), Expect = 2e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || ||||| || || || || || || || | ||||| |||| ||| | |||| Sbjct 4935 ACTGGTAAAACCATTACCCTTGAGGTAGAGTCATCCGACACCATTGATAATGTGAAAAGT 4876 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 |||| | ||||| ||||| | || || |||||||| | ||||| ||||| ||||| Sbjct 4875 AAAA-TACAGGACAAGGAAGGAATTCCACCCGATCAACAAAGATTAATCTTTGCTGGCAA 4817 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 |||||| || || | || || ||| ||||||||||| |||||||| || || | || Sbjct 4816 ACAACTTGAGGATGGTCGAACATTATCTGATTACAACATTCAAAAAGAATCTACCCTTCA 4757 Query 23814 TTTAGTT 23820 | ||||| Sbjct 4756 TCTAGTT 4750 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAAC 23692 |||| |||||||| |||||||| || || || || | ||||| | || | ||||| Sbjct 5213 TCACTGGAAAAACCATCACTCTAGAGGTCGAGTCGTCTGACACCATCGACAATGTAAAAA 5154 Query 23693 AAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCA 23752 ||||| ||||||||||| | || || |||||||| | |||| ||||| || | Sbjct 5153 GTAAAATACAAGACAAAGAAGGAATTCCTCCCGATCAACAAAGACTAATTTTTGCTGGAA 5094 Query 23753 AACAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 ||||||| || |||| || |||||| || || ||||| |||||||| || ||| | Sbjct 5093 AACAACTTGAGGACGGTCGAACACTTT--CTGACTATAACATCCAAAAAGAATCGACACT 5036 Query 23811 ACATTTAGT 23819 || || || Sbjct 5035 CCACTTGGT 5027 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| || || || ||||| || || | || ||| | || | ||||| Sbjct 5489 ACTGGCAAAACTATAACCCTTGAAGTCGAATCATCTGATACTATCGACAATGTAAAAAGC 5430 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| ||||||||||| | || ||||| |||||| | || || || || || || Sbjct 5429 AAAATTCAGGACAAAGAAGGCATCCCACCAGACCAACAGAGATTGATTTTCGCTGGAAAG 5370 Query 23755 CAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTAC 23812 || |||| || | || |||||| ||| ||||| ||||||||||| ||||| | | Sbjct 5369 CAGTTGGAGGATGGCCGAACACTTTC--CGACTACAATATACAAAAAGAATCCACTCTTC 5312 Query 23813 ATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||||| || | || || || ||| Sbjct 5311 ACTTAGTCCTACGTTTACGCGGTGGA 5286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337983441225800