Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1181 134 3e-26 seq649 129 1e-24 >seq1181 Length=24886 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || ||||| ||||||||||||| ||||| || | ||| || Sbjct 11304 ACGAAGACGAAGTACGAGATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGT 11245 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || || || || || || || | ||||||||||| || ||||| || Sbjct 11244 CCGGCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAAACGTTGTTGGTCAGGTGGAATGCC 11185 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| |||||||| ||| || ||| ||||||||||| || | ||||| || | Sbjct 11184 TTCCTTATCTTGGATTTTTGATTTTACATTGTCGATGGTGTCCGATGACTCCACCTCAAG 11125 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || ||||| | ||||| | ||| | |||||| Sbjct 11124 CGTAATAGTTTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 11083 >seq649 Length=19467 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||||||||| ||||| ||||| | ||||||||| | ||| Sbjct 4226 CGAAGACGAAGCACTAAGTGGAGAGTCGATTCCTTTTGTATGTTGTAATCGTTAAGAGTA 4285 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| ||||| ||||| | || ||||||||| || ||||||||| Sbjct 4286 CGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCCGGTGGAATACCT 4345 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||||||||| || || || || || ||||| | ||| || || | Sbjct 4346 TCTTTATCTTGGATCTTACTTTTGACGTTGTCTATTGTATCTGAAGATTCTACTTCAAGA 4405 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || ||||| ||||| Sbjct 4406 GTTATTGTTTTCCCAGTCAATGTTTT 4431 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | |||||| || ||||||||||||| || || || | | || Sbjct 5014 ACGAAGACGAAGGACCAAGTGGAGTGTCGATTCTTTTTGGATGTTATAGTCAGAAAGTGT 5073 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || || || || ||||| || || |||| |||||| ||||| ||||| || Sbjct 5074 TCGACCGTCCTCAAGTTGTTTTCCAGCAAAAATTAGTCTTTGTTGATCGGGAGGAATTCC 5133 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || || ||| ||||||||||| || | || || |||| Sbjct 5134 TTCTTTGTCTTGTATTTTACTTTTTACATTGTCGATGGTGTCAGACGACTCGACCTCTAG 5193 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| || || || || Sbjct 5194 AGTGATGGTTTTTCCAGT 5211 Score = 113 bits (124), Expect = 1e-19 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||||||||||||||| | |||||| |||| | |||| ||||| Sbjct 5302 AGGACTAAGTGAAGAGTGGATTCTTTTTGTATATTGTAGTCGGAAAGTGTTCGGCCATCC 5361 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || | || |||||||| || || || ||||| ||||| Sbjct 5362 TCCAACTGCTTTCCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATGCCTTCTTTGTCC 5421 Query 225622 TGGATCTTTTGC--TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 || | |||||| || ||| ||||| || || || | ||| || || | || || | Sbjct 5422 TGAA--TTTTGCTTTTTACATTGTCGATAGTATCAGATGATTCGACTTCAAGGGTTATAG 5479 Query 225680 TCTTGCCCGT 225689 | ||||| || Sbjct 5480 TTTTGCCAGT 5489 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || || ||||||||||| | |||||||| | || || Sbjct 4738 ACGAAGACGGAGAACTAGATGAAGGGTAGATTCTTTTTGAATGTTGTAATCAGATAATGT 4797 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || ||||| ||||| | || |||||| ||||| ||||| || Sbjct 4798 TCGACCATCCTCAAGTTGTTTGCCAGCAAAGATTAATCTTTGTTGATCGGGTGGAATTCC 4857 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || |||||| || |||||||| || | || || || | Sbjct 4858 TTCCTTGTCCTGTATTTTACTTTTCACATTATCAATGGTGTCGGATGACTCTACCTCAAG 4917 Query 225672 CGTGATCGTCTTGCCCGT 225689 || || || || || || Sbjct 4918 GGTAATGGTTTTACCAGT 4935 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || |||||||||||||| |||| ||||| || | ||||||| ||||| || || || Sbjct 4472 TGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAAAGTTCGGCCATCCTCAAGTTGT 4531 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | ||| |||||||| || ||||| ||||| || ||||| | ||| Sbjct 4532 TTTCCTGCAAATATTAATCGCTGTTGGTCCGGAGGAATTCCTTCTTTATCTTGAA--TTT 4589 Query 225631 TGCTT 225635 ||||| Sbjct 4590 TGCTT 4594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192434176406900