Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq9 89.7 4e-13 >seq3 Length=3706406 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||||||| || || | || | ||||||||||| || ||||| ||||| | Sbjct 1555248 CCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1555189 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || | || || | ||||||||| ||| Sbjct 1555188 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 1555129 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 1555128 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1555069 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| || ||||| || || | || ||||| || || ||||| ||| Sbjct 1555068 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 1555018 >seq9 Length=1038790 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||||| || || ||||| |||||||| ||||| | Sbjct 527377 CCACCACGCAGACGCAGGACCAGGTGCAATGTCGATTCCTTCTGAATGTTGTAGTCGGAG 527318 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||| ||| |||||||| |||| | || |||||| || ||| Sbjct 527317 AGGGTCCGACCGTCTTCCAACTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGGGGA 527258 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| || || | ||| Sbjct 527257 ATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCCGATGACTCAACC 527198 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || || || ||||| || || ||||| Sbjct 527197 TCGAGCGTGATGGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 527151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | ||| | ||||||||||| || ||||| ||||| | Sbjct 527149 CCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 527090 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || ||||||| ||||| || || || | || || | ||||||||| || Sbjct 527089 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGG 527030 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||| |||||||| |||||| Sbjct 527029 ATGCCCTCCTTGTCTTGGATCTT 527007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259050757764