Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 392 3e-104 seq3 152 5e-32 seq9 147 2e-30 seq7 123 3e-23 >seq1 Length=5717297 Score = 392 bits (434), Expect = 3e-104 Identities = 576/807 (71%), Gaps = 21/807 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||| ||| | |||||| Sbjct 4504474 ATTTGGCAAATGTACAAGAAGGCCGAGGCCTCATTCTGGACCGCCGAAGAGATCGACCTG 4504415 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||||| ||||||| | ||| ||||||| |||| | |||||| Sbjct 4504414 TCCAAGGACACTCACGACTGGAACAACCGCCTGAACGAGGACGAAAAATACTTCATCTCC 4504355 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| || |||||| || || || ||||||||||| ||||| ||||| Sbjct 4504354 CACATCCTCGCCTTCTTTGCCGCCTCTGATGGAATTGTCAACGAGAACCTGGTTGAGCGA 4504295 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || || |||| ||| | | ||||| |||||||||||||| || |||||| || Sbjct 4504294 TTCAGCGGAG-AGGTCCAGATCCCTGAGGCCCGGTGCTTCTACGGTTTCCAGATCATGAT 4504236 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928 ||||||| | ||||| || | || || |||||| ||||| ||| | | | | | Sbjct 4504235 GGAGAACATCCACTCCGAGACCTACTCCCTCCTCATTGACACCTACATCAAGGACACCGC 4504176 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 || || || || | || |||||| |||| ||||| || ||| || ||||||| Sbjct 4504175 CCAGCGGACGCACC---TCTTCAACGCCGTCGACACGATTCCCTGCATCCGCAAGAAGGC 4504119 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| ||||| ||||| | | || | || |||| | | |||| || || || Sbjct 4504118 CGATTGGGCCCTGCGATGGATTTCGGACAAGAACTCCACCTTTGCCCAGCGTCTCGTTGC 4504059 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || ||||||||||| |||||||| || ||| || |||| || |||||||| Sbjct 4504058 CTTTGCCGCCGTCGAGGGTATCTTCTTTAGCGGTGCTTTTGCATCCATTTTCTGGCTCAA 4503999 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| ||||| |||||||||||||| || ||| ||||||||||||||| | |||||||| Sbjct 4503998 GAAGCGCGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 4503939 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG----AGCG 117224 ||| || |||||||||||| | || | ||| | | || |||| ||| Sbjct 4503938 TCTCCACACGGACTTTGCCTGTCTCTTGCACTCGCACCT----CCGCAACCGTGCCAGCA 4503883 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 || | || | | ||| ||||||| || ||||||||||||||| || | |||| Sbjct 4503882 AGGAGTCGATCCGAGCCATCATCACCGATGCCGTCGCCATCGAGCAGGAGTTTTTGACCG 4503823 Query 117285 AAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 | || |||||| |||| |||||||| | || | | |||| ||| ||||||||| Sbjct 4503822 AGGCCCTGCCGTGTGC-CCTGCTGGGCATGAACTCCACCCTGATGAAGCAGTACATCGAG 4503764 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403 |||||||||||| | || || ||| || | | || ||| ||||||| | ||||| Sbjct 4503763 TTCGTCGCCGACCGTCTCCTCATCGCCCTCGGCAACGAGAAGATCTACAACGCCACCAAC 4503704 Query 117404 CCGCTGGACTTTATGAACCTCATCTCC 117430 || | ||||| ||| | ||||||| Sbjct 4503703 CCCTTCGACTTCATGGAGAACATCTCC 4503677 >seq3 Length=3706406 Score = 152 bits (168), Expect = 5e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 1555019 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1555078 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 1555079 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 1555137 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| ||| ||||| ||||| || || | ||||||||| |||||| Sbjct 1555138 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTA 1555197 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| |||| || || || || Sbjct 1555198 CAACATCCAGAAGGAGTCCACCCTCCACCTCGT 1555230 >seq9 Length=1038790 Score = 147 bits (162), Expect = 2e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || |||||||| ||||| |||||| |||| ||||| || |||||| | | Sbjct 526933 TCGTCAAGACTCTCACGGGTAAAACAATCACCCTCGAGGTCGAGTCCTCCGACACCATCG 526992 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | ||||| ||||||||||| | |||||||| || || | Sbjct 526993 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTGA 527052 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || ||||| || |||| || |||||| |||||||||||||||||||| Sbjct 527053 TCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 527112 Query 40880 AGGCCACGCTGCATCTAGT 40898 || |||| || ||||| || Sbjct 527113 AGTCCACCCTCCATCTCGT 527131 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| |||||||| ||| |||| |||||| | | | Sbjct 527379 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAAACCATTACCCTCGAGGTCGAATCAAGC 527438 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || || | ||| ||||| || ||||| || | || || Sbjct 527439 GACACCATCGACAACGTTAAATCGAAGA-TTCAGGACAAGGAAGGCATTCCTCCTGATCA 527497 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||||| || |||| |||||| | | ||||||||| Sbjct 527498 GCAGCGCCTTATCTTCGCTGGTAAGCAGCTCGAAGACGGTCGCACCTTGAGCGACTACAA 527557 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| ||||||||| || || Sbjct 527558 CATCCAGAAGGAGAGCACGCTGCACCTTGT 527587 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| |||| || || | | Sbjct 527151 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACGCTCGAGGTTGAGTCATCG 527210 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| ||||| || ||| | || || Sbjct 527211 GACACGATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAGGGTATTCCCCCTGATCA 527269 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | || | ||||||||| ||| |||| |||| || |||||| ||||||||| Sbjct 527270 GCAGCGATTGATTTTCGCGGGCAAGCAGTTGGAAGACGGTCGGACCCTCTCCGACTACAA 527329 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| |||||||| | || |||| || || |||| Sbjct 527330 CATTCAGAAGGAATCGACATTGCACCTGGTCCTGCG 527365 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||||||| |||| || || | || Sbjct 526592 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCGTCC 526651 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||||||||| | |||||| Sbjct 526652 GACACCATTGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 526711 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| || || || || | ||||| | || |||||| Sbjct 526712 CAACGCCTCATCTTTGCTGGCAAGCAACTCGAGGATGGCCGCACTTTGTCGGATTACAAC 526771 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 526772 ATCCAGAAGGAGTCCACCCTCCACCTCGT 526800 >seq7 Length=1181343 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || |||||||| || ||||| ||| |||| ||||| || | |||| | Sbjct 1039663 TTCGTGAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACGATC 1039604 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| ||| | Sbjct 1039603 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGATTG 1039544 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || |||||| ||||||||||||||||||| Sbjct 1039543 ATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACCCTCTCCGACTACAACATCCAGAAG 1039484 Query 40879 G 40879 | Sbjct 1039483 G 1039483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219013233040