Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq9 134 1e-26 seq3 123 2e-23 seq7 86.0 5e-12 seq8 84.2 2e-11 >seq9 Length=1038790 Score = 134 bits (148), Expect = 1e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||||| || |||||||| || |||||| | Sbjct 527570 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCGAGCTGCTTACCAGCGAA 527511 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || ||||||||||| ||||| ||||| |||||||| ||| || |||||| | Sbjct 527510 GATAAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGATTTAACGTT 527451 Query 118667 TTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| | || | |||||||||| ||| | ||||| || |||| || || | Sbjct 527450 GTCGATGGTGTCGCTTGAT-TCGACCTCGAGGGTAATGGTTTTACCCGTCAAGGTCTTGA 527392 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 527391 CGAAGATCTGCAT 527379 Score = 131 bits (144), Expect = 1e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || ||||||||||| || |||||| ||||||||| || Sbjct 526795 GTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGACAAAGTGCGGCCATCCTCGAGTTG 526736 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| ||||||| || ||||| || ||||| |||||||||||||| || || Sbjct 526735 CTTGCCAGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTT 526676 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| | ||| ||||||| ||| | || || ||||| Sbjct 526675 GGACTTCACATTGTCAATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTTCCGGT 526616 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGC 118741 |||||| || || || ||||||||||| Sbjct 526615 CAGAGTCTTGACGAAGATCTGCATGGC 526589 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| | || || ||||||||||| Sbjct 527125 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGC 527066 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| |||| ||||||||||| |||||||| ||||||||||||||| || || Sbjct 527065 TTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTC 527006 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | | ||||||||||| ||| | ||||| || || Sbjct 527005 GACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTACCCGTG 526946 Query 118716 AGAGTTTTTAC 118726 ||||| || || Sbjct 526945 AGAGTCTTGAC 526935 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||| || || || ||||||||||| ||| | || || || || Sbjct 527359 ACCAGGTGCAATGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTCCGACCGTCTTCC 527300 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || ||| | || | ||||||||||| || || || |||||||||||| | Sbjct 527299 AACTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGGGGAATACCCTCCTTGTCTTGA 527240 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||| ||||||| || | || ||| Sbjct 527239 ATCTTGGACTTGACGTTGTCGATCGTGTCCGATGACTCAACCTCGAGCGTGATGGTCTTG 527180 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 527179 CCCGTCAATGTCTTGACGAAGATCTGCAT 527151 >seq3 Length=3706406 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||| || | ||||| || ||||| || || |||||||| ||| Sbjct 1555249 ACCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1555190 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||||||||| || || ||| ||||||| |||||||| ||||| || Sbjct 1555189 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGG 1555130 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || | |||| |||||| | ||| || Sbjct 1555129 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1555070 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | ||| || || || || || || || ||||||||||| Sbjct 1555069 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1555022 >seq7 Length=1181343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | || || ||| |||||||| || || ||| |||| Sbjct 1039485 TTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATC 1039544 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| ||||| || |||||||||||||| || || || || | ||| Sbjct 1039545 AATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1039604 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||||| ||| | || || || || || || || || ||| Sbjct 1039605 ATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCACGAAA 1039664 >seq8 Length=1130364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| || || || || ||||| || || |||| | || | || |||||| | | Sbjct 758568 GGTTGACGACCTGGAATTCACCGGCCAGGACTCGTCGCTGGTAGATGTTGGACGTGTAAG 758509 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| |||||||||||||||| ||||||| || | || || |||||| ||| | Sbjct 758508 GCTCGAAGCATTCGTTGTTGCCGAGGATCTGCGAGGTGCTGGCGGTCGGCATGGGCGCGA 758449 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 ||| ||| ||| | | ||||| || || || | || ||| || ||| |||| Sbjct 758448 CCAGCAAGCTGTTGCGGAGGCCGTGCTCCTTGATCTGCTCCTTCAAGGAGTCCCACTCCC 758389 Query 133402 ACAG 133405 |||| Sbjct 758388 ACAG 758385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830246668068