Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 129 7e-25 seq3 104 3e-17 seq7 87.8 2e-12 >seq9 Length=1038790 Score = 129 bits (142), Expect = 7e-25 Identities = 176/242 (73%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 42944 ATTGTCCT-ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAA 43002 ||| |||| | || ||||| | | ||| | || | |||| ||||||||||| || | Sbjct 527619 ATTCTCCTCACTGGCCTCCACGAAGACGGAGAACAAGGTGCAGCGTGCTCTCCTTCTGGA 527560 Query 43003 TATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCT 43062 | ||||| || || || || |||| || ||||||||||||||||| || || |||| Sbjct 527559 TGTTGTAGTCGCTCAAGGTGCGACCGTCTTCGAGCTGCTTACCAGCGAAGATAAGGCGCT 527500 Query 43063 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTG 43121 |||| || | || | || ||||||||| ||| | || | || | ||| | | | ||| Sbjct 527499 GCTGATCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTCGATTTAACGTTGTCGATGGTG 527441 Query 43122 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 ||||| ||||| || |||| || |||||||| ||||| | ||||| || ||||| ||| Sbjct 527440 TCGCTTGATTCGACCTCGAGGGTAATGGTTTTACCCGTCAAGGTCTTGACGAAGATCTGC 527381 Query 43182 AT 43183 || Sbjct 527380 AT 527379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 527114 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 527055 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || ||||||||| ||| || |||| | Sbjct 527054 GATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATT 526995 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| ||||| ||||| ||||| || ||||| || Sbjct 526994 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTACCCGTGAGAGTCTTGAC 526935 >seq3 Length=3706406 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 1555213 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1555154 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 1555153 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1555095 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 1555094 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 1555035 Query 43171 CAAAGATTTGCATTTT 43186 | || || ||||| || Sbjct 1555034 CGAAAATCTGCATCTT 1555019 >seq7 Length=1181343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || ||||| | || || |||||||| || ||||| | Sbjct 1039483 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGA 1039542 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 1039543 TCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1039602 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || |||| || ||||| || ||||| || ||||| || | Sbjct 1039603 CGATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCACGA 1039662 Query 43174 A 43174 | Sbjct 1039663 A 1039663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817392716120