Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq11 149 1e-30 seq2 98.7 2e-15 >seq11 Length=971208 Score = 149 bits (164), Expect = 1e-30 Identities = 281/407 (69%), Gaps = 20/407 (5%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| |||| || ||||| || ||||||||||| |||||||| || Sbjct 122016 CTTCCGCACATGCTGTTCTACGGACCGCCCGGTACCGGCAAGACGTCGACCATCCTCGCC 122075 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGC-GCGTGCTCGAGCTGAACGC 254119 || ||| || | ||| | || || | || | | || |||||||||||||| Sbjct 122076 CTCGCCAAGGAGCTCTACGGCCCCGAGATGATCA-AGTCCAGAGTCCTCGAGCTGAACGC 122134 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTT-CTC-CA---A 254173 || ||||| || || | | | ||||||| |||||| |||||| |||| | | || | Sbjct 122135 CTCCGACGAGCGAGGCATCGCCATCGTCCGGGACAAGGTCAAGAACTTTGCGCGCATGCA 122194 Query 254174 GATGTCGATTTCGTCGT--TCCAACCCGG----------CTGTCCGCCTTTCAAGCTCGT 254221 | || | | || | ||| || || ||| ||||| |||||| || | Sbjct 122195 GCTGACCAACCCGCCCGCCTCCTACAGGGACAAGTACCCCTGCCCGCCCTTCAAGATCAT 122254 Query 254222 GATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGAT 254281 ||||| |||||||| ||| ||||||| ||||| ||| |||||| || || ||||| Sbjct 122255 CATCCTCGACGAGGCCGACTCCATGACCCAAGACGCCCAGAGCGCCCTGCGACGGACGAT 122314 Query 254282 GGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCAT 254341 ||||||| || | | ||||| || ||||| | ||||||||||| | | |||||| Sbjct 122315 GGAGACGTACAGCAAGATCACGCGCTTCTGCCTCATCTGCAACTACGTCACCAGGATCAT 122374 Query 254342 CGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 || ||| || || |||||| |||||| || |||| | ||||| Sbjct 122375 CGACCCTCTCGCCAGCCGGTGCAGCAAGTTCCGCTTCAAGAGCCTCG 122421 >seq2 Length=3830584 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| || |||| || |||||||| || |||||||| || |||||||||||||| || Sbjct 3141682 TGCTGCTCTACGGCCCGCCCGGAACGGGTAAGACGTCGACGATCCTGGCGCTGGCGCGGC 3141741 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 | | | |||| | | ||| || | | ||||| ||||| ||||| || ||||| | Sbjct 3141742 GCATCTACGGCGCGAGCAACGTGCGGCGGATGGTGCTGGAGCTCAACGCCTCGGACGACC 3141801 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 |||| | ||||| || ||||| |||||||||| || Sbjct 3141802 GCGGCATCGACGTGGTGCGCGAGCAGATCAAGACGTT 3141838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766001028672