Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq1 111 2e-19 >seq9 Length=1038790 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| | ||| | ||| ||| || || ||||| || ||| Sbjct 527608 TGGCCTCCACGAAGACGGAGAACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 527549 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| |||||||||||| |||||||| |||| || || |||||||| ||| Sbjct 527548 CTCAAGGTGCGACCGTCTTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGATCAGGA 527489 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTC 139713 || |||||||| ||||| ||| | || | |||| | | || | |||||| | | || Sbjct 527488 GGAATGCCTTCCTTGTC-CTGAATCTTCGATTTAACGTTGTCGATGGTGTCGCTTGATTC 527430 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | || || || ||||| || || ||||| || |||||| Sbjct 527429 GACCTCGAGGGTAATGGTTTTACCCGTCAAGGTCTTGACGAAGATCTGCATA 527378 >seq1 Length=5717297 Score = 111 bits (122), Expect = 2e-19 Identities = 350/533 (66%), Gaps = 11/533 (2%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| | |||| |||| || | ||||| |||| |||||||| || ||||| Sbjct 4504158 TCAACGCCGTCGACACGATTCCCTGCATCCGCAAGAAGGCCGATTGGGCCCTGCGATGGA 4504099 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 | || | || |||| |||||| | ||||| || || ||||| || || ||| Sbjct 4504098 TTTCGGACAAGAACTCCACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCCGTCGAGGGTA 4504039 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCC 52710 | || ||| ||| |||||| | || || | |||| || | || | | |||||| Sbjct 4504038 TCTTCTTTAGCGGTGCTTTTGCATCCATTTTCTGGCTCAAGAAGCGCGGTC-TCATGCCC 4503980 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 |||||||| || ||||||| | || || || ||||| || | ||||| || ||||| Sbjct 4503979 GGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACGGACTTTGCC 4503920 Query 52771 TGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCA--TATGAAAAAATTCTAGACA 52828 || | | || | | ||| | | | || || || | || || | || || Sbjct 4503919 TG--TCTCTTGCACT-CGCACCT--CCGCAACCGTGCCAGCAAGGAGTCGATCCGAGCCA 4503865 Query 52829 TGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTAT-CA 52887 | | | || ||||||| ||| || | |||||||| || || || | |||| | | Sbjct 4503864 TCATCACCGATGCCGTCGCCATCGAGCAGGAGTTTTTGACCGAGGCCCT-GCCGTGTGCC 4503806 Query 52888 TTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG 52947 || ||||||||||| | ||| ||||| ||||||||||||| || || ||| | || Sbjct 4503805 CTGCTGGGCATGAACTCCACCCTGATGAAGCAGTACATCGAGTTCGTCGCCGACCGTCTC 4503746 Query 52948 TTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAAC 53007 | || ||||| | ||| ||| || || |||||||| || ||| | Sbjct 4503745 CTCATCGCCCTCGGCAACGAGAAGATCTACAACGCCACCAACCCCTTCGACTTCATGGAG 4503686 Query 53008 AACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 ||||| || |||| ||||| || ||||| || |||| ||||| || || || Sbjct 4503685 AACATCTCCCTCGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 4503633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063820176800