Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-19 >seq1 Length=5717297 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || |||||||| || ||||||||||| || || Sbjct 4230832 GCCAAGCGTCACCGAAAGAT-TCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 4230890 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 4230891 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 4230931 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || |||||||| || || |||||||| || || Sbjct 5069891 GCCAAGCGTCACCGAAAGAT-TCTTCGTGACAACATCCAGGGCATTACCAAGCCCGCCAT 5069833 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| |||||| Sbjct 5069832 CCGACGTCTTGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 5069792 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| || | ||| | |||| |||||| || ||||||| || | Sbjct 4231000 TGATCTACGAAGAGACCCGAGGTGTCCTTAAGACCTTCCTTGAGGGTGTTATCCGCGACG 4231059 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || |||||||||||||| || ||||| ||||| || |||| | ||||| | Sbjct 4231060 CCGTCACATACACCGAGCACGCTAAGCGGAAGACGGTCACATCGCTGGACGTTGTCTACG 4231119 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||| | | || ||||| || ||||| Sbjct 4231120 CCCTGAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 4231163 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| || | ||| | |||| ||||||| || ||| |||| || | Sbjct 5069705 TGATCTACGAAGAGACCCGCGGTGTCCTCAAGACCTTCCTCGAGGGCGTCATCCGCGACG 5069646 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || | ||||| | Sbjct 5069645 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACG 5069586 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 5069585 CCCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGCGGTTAA 5069542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075173485097