Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9 102 7e-17 seq3 84.2 2e-11 >seq9 Length=1038790 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || ||| | |||||| |||| ||||| | | | Sbjct 527379 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAAACCATTACCCTCGAGGTCGAATCAAGC 527438 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| |||||||| ||||| ||||| Sbjct 527439 GACACCATCGACAACGTTAAATCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 527498 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| |||||||| | | | | | ||||| || ||| Sbjct 527499 CAGCGCCTTATCTTCGCTGGTAAGCAGCTCGAAGACGGTCGCACCTTGAGCGACTACAAC 527558 Query 24171 ATTCAAAAAGA 24181 || || || || Sbjct 527559 ATCCAGAAGGA 527569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 || || ||| | || ||| |||| |||||| || |||||||||||| | ||||| Sbjct 526947 ACGGGTAAAACAATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCG 527006 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| || ||||| |||||||| || ||| | ||||| | || ||| ||| Sbjct 527007 AAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTGATCTTCGCCGGAAAG 527066 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 || ||||| || | | ||| | || ||| || ||||| || || || || || Sbjct 527067 CAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 527119 >seq3 Length=3706406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || |||| ||| | || || ||| | Sbjct 1555018 CAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 1555077 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| Sbjct 1555078 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 1555137 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||||||||| ||||| |||| | | | | || ||| || Sbjct 1555138 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTA 1555197 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 1555198 CAACATCCAGAAGGAGTCCAC 1555218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935848044495