Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 seq3 96.9 3e-15 >seq9 Length=1038790 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||| || | || || | | ||||| | ||| Sbjct 526794 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGACAAAGTGCGGCCATCCTCGAGTTGC 526735 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || || || || ||||| ||| | |||||| ||||| || | Sbjct 526734 TTGCCAGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTG 526675 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | |||| || | ||||||||| ||||||||| Sbjct 526674 GACTTCACATTGTCAATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTTCCGGTC 526615 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 526614 AGAGTCTTGACGAAGATCTGCAT 526592 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||||||||||| | |||| | ||||| Sbjct 527134 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 527075 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | || || ||||| ||||| ||| | |||||| ||||| Sbjct 527074 TCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 527015 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | | |||||| || ||| || | |||||| ||| Sbjct 527014 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTT 526955 Query 16904 TTTCCGGTCAGCGTTTTGAC 16923 || || || || || ||||| Sbjct 526954 TTACCCGTGAGAGTCTTGAC 526935 >seq3 Length=3706406 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||||||| || | || || ||||||||||| || ||||||||||||| Sbjct 1555248 CCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1555189 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||| || | || || ||||| ||||| || Sbjct 1555188 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 1555129 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||| || | | | | |||||| | |||| Sbjct 1555128 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1555069 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||| || || || || || || ||||| ||||||||||| ||| Sbjct 1555068 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 1555018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087856826710