Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 118 2e-21 seq1 113 9e-20 seq4 98.7 2e-15 >seq5 Length=2237531 Score = 118 bits (130), Expect = 2e-21 Identities = 441/678 (65%), Gaps = 29/678 (4%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||||| ||||| || ||||||||||||||||| ||||| | |||||||| || | Sbjct 148763 GTCGGTTCGCTGTCTGGCGGTTGGAAGATGAAGCTTGCCCTGGCCCGCGCCATGCTCAAG 148822 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| ||||| || || || || || || |||||| ||||| | ||||| | ||| Sbjct 148823 AAGGCCGACGTCCTCCTCCTCGACGAACCTACGAACCACTTGGACGTCGCCAACATTGCC 148882 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | || | | | | | || ||||| |||||| Sbjct 148883 TGGCTCGAGAACTACCTCAAGACTCACCCCGACATCACGAGCTTGATCGTCTCCCACGAC 148942 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATT---CACTATGAGCAAAATCTGAAG 279932 || || ||| | ||| ||| | | || |||| ||||| |||| || |||| Sbjct 148943 TCCGGTTTCTTGGATAACGT---CACGACCGACATTTACCACTACGAGCCCAACAAGAAG 148999 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCCG 279990 ||| | ||| ||||||||| | || || || ||| || |||||||| Sbjct 149000 CTCGCGTGCTACAAGGGCAACCTGGCGGCCTT--TGTCAAGCTTCGACCTGAGGCCAAGA 149057 Query 279991 CCTACTATGACCTGAAGGACGCCAC-CGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||||| ||| || || | | | ||| | ||||| || ||| | ||| Sbjct 149058 GCTACTACACCCTCTCGG-CGTCGCAGGTGCAGTTTAAGTTCCCCCCTCCCGGGATCCTG 149116 Query 280050 GAGGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTT 280107 ||||| | || | | ||||| ||||| | | || |||||||| | | Sbjct 149117 TCCGGCATTAAGTCCATGACGCGCGCCATCATCCGCATGACC--AACGTCTCCTACACAT 149174 Query 280108 ATCCCAATGGCCCCAA--CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163 | ||||| | |||| | | || ||| | ||| || ||| | | || ||| Sbjct 149175 ACCCCAAGGCGACCAAGCCGTCCCTCCAGGA-CGTCTCCTGTCAGCTCACATTGTCCTCT 149233 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || | | |||| |||||||||||||| || |||||||| || ||||| |||| || Sbjct 149234 CGCGTGGCCATCATCGGACCCAATGGTGCCGGAAAGTCTACGCTCATCAAGCTCCTCACC 149293 Query 280224 GGCGAGAC---CCAGGCCA-CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 || ||||| || | | | | || |||| |||||| |||||| |||| || | Sbjct 149294 GGTGAGACAATCCCGTCGACCGGAAAGGTC----GAGAAGCACCCCAACCTGCGTATTGG 149349 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||| | | ||| |||||| |||||||| | ||| || ||||| Sbjct 149350 ATACATCAAGCAGCACGCCCTGGAGCACGTCGAGATGCACCTGGAGAAGACGCCCAACCA 149409 Query 280340 ATACATTCAGTGGCGCTA 280357 ||| | |||||||| || Sbjct 149410 GTACCTCCAGTGGCGATA 149427 >seq1 Length=5717297 Score = 113 bits (124), Expect = 9e-20 Identities = 550/863 (64%), Gaps = 23/863 (3%) Strand=Plus/Plus Query 251526 CATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCT 251584 ||| ||||| || | | ||||| ||| ||||| || ||||| || | |||||| Sbjct 4503614 CATGACACC-GGCCTTCTGATAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGC 4503672 Query 251585 CCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGC 251644 | || ||||| ||||||||||||||||||||| ||||| ||||| ||| | || Sbjct 4503673 CGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGATCTTCTCGTTGC 4503732 Query 251645 CAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGT 251704 | || || | || || ||||| || || ||||| | ||||| |||||| |||| Sbjct 4503733 CGAGGGCGATGAGGAGACGGTCGGCGACGAACTCGATGTACTGCTTCATCAGGGTGGAGT 4503792 Query 251705 TCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTG 251764 ||||||| | || ||| || | ||||| | || |||| ||| |||| || | Sbjct 4503793 TCATGCCCAGCAGGGCACACGGCAGGGCCTCGGTCAAAAACTCCTGCTCGATGGCGACGG 4503852 Query 251765 CCTCCTCCACAATTGC------CTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818 | || | || || | | ||| ||| | || ||| || | | Sbjct 4503853 CATCGGTGATGATGGCTCGGATCGACTCCT-TGC---TGGCA--CGGTTGCGGAGGTGCG 4503906 Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878 ||| || ||| | |||| | ||| ||||||||||| ||| ||||| |||||||| Sbjct 4503907 AGTGCAAGAGACAGGCAAAGTCCGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGG 4503966 Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGAT 251937 | | ||||| ||||| | || || ||| |||||||||| || | ||||||| | Sbjct 4503967 AGAAGGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAAATGGATGCAAAAGCA- 4504025 Query 251938 CCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAA---CGAC 251994 || || | | ||||||||| | | ||||| || |||| ||||| || Sbjct 4504026 CCGCTAAAGAAGATACCCTCGACGGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTGGAG 4504085 Query 251995 TTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTT 252054 || | | ||| | | | | ||||| | |||||||| | | ||| || || Sbjct 4504086 TTCTTGTCCGAAATCCATCGCAGGGCCCAATCGGCCTTCTTGCGGATGCAGGGAATCGTG 4504145 Query 252055 TCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGG 252114 |||| || | ||||| |||||| ||| ||||| |||| | |||| ||| Sbjct 4504146 TCGACGGCGTTGAAGAGGTGCGTCCGCTGGGCGGTGTCCTTGATGTAGGTGTCAATGAGG 4504205 Query 252115 AGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGC 252174 || ||||| |||| || |||||| || | | |||||| || | ||||| || Sbjct 4504206 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCACCGG 4504265 Query 252175 GCGGAAGGG-TCGGTGACT-TCCGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGC 252232 || |||| || | || |||| ||| | | | | |||||| | || || | Sbjct 4504266 GCCTCAGGGATCTGGACCTCTCCGCTGAATCG--CTCAACCAGGTTCTCGTTGACAATTC 4504323 Query 252233 CATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGA 252292 |||| | | ||||||||| | || ||| |||||||| || || ||||| | Sbjct 4504324 CATCAGAGGCGGCAAAGAAGGCGAGGATGTGGGAGATGAAGTATTTTTCGTCCTCGTTCA 4504383 Query 252293 GCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATG 252352 | || ||||||| | |||||| ||| | ||||| | |||||||||| Sbjct 4504384 GGCGGTTGTTCCAGTCGTGAGTGTCCTTGGACAGGTCGATCTCTTCGGCGGTCCAGAATG 4504443 Query 252353 TGGACACCGCCTTCTTGTACATT 252375 || | | ||||||||||||||| Sbjct 4504444 AGGCCTCGGCCTTCTTGTACATT 4504466 >seq4 Length=2575654 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 1056250 GGCGAGGACCTCTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATCCTGCTCAAC 1056309 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| | ||||||||||| | || || |||||| ||||||||| || | Sbjct 1056310 CAGACCCACCTCCGCCTCAAGCGTGGCCAGCGCTACGGTCTCTGCGGTCCCAACGGTTCC 1056369 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | || || || || || ||| Sbjct 1056370 GGAAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 1056428 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| |||| ||| Sbjct 1056429 GAGCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTCGATTCC 1056471 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || || ||| ||||| ||| | | || || Sbjct 1057654 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGACGGTCCTGGCCGCCTGC 1057713 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||||| || ||| ||||||| ||||||||||| ||||||||||| ||||| || Sbjct 1057714 TCT-TGGCAACGACCCCACCTGATCGTCCTCGACGAGCCCACCAACTATCTCGACCGTGA 1057772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836418094389