Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq3 87.8 2e-12 >seq9 Length=1038790 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||||||| || ||| ||||| || || ||||||||| || Sbjct 527569 TCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCGAGCTGCTTACCAGCGAAG 527510 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || ||||| || || |||||||||||||| ||||| |||||| ||| | | Sbjct 527509 ATAAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGATTTAACGTTG 527450 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||||||| | |||||||| || | ||| | ||||| || |||| || || || Sbjct 527449 TCGATGGTGTCGCTTGATTCGACCTCGAGGGTAATGGTTTTACCCGTCAAGGTCTTGACG 527390 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 527389 AAGATCTGCAT 527379 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || ||| || ||| || ||||| || ||| Sbjct 526788 GTGGACTCCTTCTGGATGTTGTAATCCGACAAAGTGCGGCCATCCTCGAGTTGCTTGCCA 526729 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 526728 GCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 526669 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || || | ||| | || || ||||||||||| Sbjct 526668 ACATTGTCAATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTC 526609 Query 114366 TTTACAAAAATCTGCATGGC 114385 || || || ||||||||||| Sbjct 526608 TTGACGAAGATCTGCATGGC 526589 >seq3 Length=3706406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || |||| || | || | || || || || || |||||||| ||| Sbjct 1555249 ACCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1555190 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||| || || || || || ||| ||||||| ||||| ||||| || || Sbjct 1555189 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGG 1555130 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||||| || | | || | |||||||| || || || Sbjct 1555129 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1555070 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| || || || || || || || ||||||||||| Sbjct 1555069 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1555022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134251508748