Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 136 9e-27 seq3 125 2e-23 >seq9 Length=1038790 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | || || || || | |||||| || || ||||| || |||||| Sbjct 527608 TGGCCTCCACGAAGACGGAGAACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 527549 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| |||||||| | || || || |||||||| || ||||| ||| | Sbjct 527548 CTCAAGGTGCGACCGTCTTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGATCAGGA 527489 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || ||||| || |||| ||| ||||| || || | ||||| ||||| Sbjct 527488 GGAATGCCTTCCTTGTCCTGAATCTTCGATTTAACGTTGTCGATGGTGTCGCTTGATTCG 527429 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || |||| ||||||||||| |||||||| Sbjct 527428 ACCTCGAGGGTAATGGTTTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 527379 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | ||| || || ||||| || || || | Sbjct 526818 CCACCGCGAAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAC 526759 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | ||| || || || ||||| || || || || | ||| Sbjct 526758 AAAGTGCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGGCGTTGCTGGTCAGGAGGG 526699 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | ||||| || || || | ||| ||| || || Sbjct 526698 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCAATGGTGTCGGACGACTCCACC 526639 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||||||||||||||| |||||||| Sbjct 526638 TCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 526592 Score = 116 bits (128), Expect = 9e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | ||| || || ||||| || ||||||| | Sbjct 527149 CCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 527090 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || ||||| ||||||||||||||||| || ||| Sbjct 527089 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGG 527030 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| |||| || || || || || | ||| || || || Sbjct 527029 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 526970 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 ||||| ||||| || || || || ||||||||||||| Sbjct 526969 TCGAGGGTGATTGTTTTACCCGTGAGAGTCTTGACGA 526933 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||| || || |||||||| || || || || ||||| Sbjct 527342 TTCCTTCTGAATGTTGTAGTCGGAGAGGGTCCGACCGTCTTCCAACTGCTTGCCCGCGAA 527283 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||||| ||| | || || || || || || || || || | || ||||| Sbjct 527282 AATCAATCGCTGCTGATCAGGGGGAATACCCTCCTTGTCTTGAATCTTGGACTTGACGTT 527223 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || || || ||||||||||| ||||| || |||| |||||||| Sbjct 527222 GTCGATCGTGTCCGATGACTCAACCTCGAGCGTGATGGTCTTGCCCGTCAATGTCTTGAC 527163 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 527162 GAAGATCTGCAT 527151 >seq3 Length=3706406 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || ||||| || | ||| || || ||||| || ||||||| | Sbjct 1555248 CCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1555189 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 1555188 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 1555129 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | ||| || || || Sbjct 1555128 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1555069 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| || || ||||||||||| |||||||| Sbjct 1555068 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1555022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653961684662