Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 seq3 104 3e-17 seq7 87.8 2e-12 >seq9 Length=1038790 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||||||||||| || || ||||| || || || || |||| || |||||| Sbjct 527581 TGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCGAGCTGC 527522 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||||||||| || || |||||||| || | || | || ||||||||| ||| | || Sbjct 527521 TTACCAGCGAAGATAAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC-TGAATCTT 527463 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | || | ||| | | | |||||||| ||||| || |||| || |||||||| ||||| Sbjct 527462 CGATTTAACGTTGTCGATGGTGTCGCTTGATTCGACCTCGAGGGTAATGGTTTTACCCGT 527403 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || ||||| ||||| Sbjct 527402 CAAGGTCTTGACGAAGATCTGCAT 527379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 527114 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 527055 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || ||||||||| ||| || |||| | Sbjct 527054 GATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATT 526995 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || |||| ||||| ||||| ||||| || ||||| || Sbjct 526994 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTACCCGTGAGAGTCTTGAC 526935 >seq3 Length=3706406 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 1555213 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1555154 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 1555153 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1555095 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 1555094 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 1555035 Query 42196 CAAAGATTTGCATTTT 42211 | || || ||||| || Sbjct 1555034 CGAAAATCTGCATCTT 1555019 >seq7 Length=1181343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || ||||| | || || |||||||| || ||||| | Sbjct 1039483 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGA 1039542 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 1039543 TCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1039602 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | |||||| || || || |||| || ||||| || ||||| || ||||| || | Sbjct 1039603 CGATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCACGA 1039662 Query 42199 A 42199 | Sbjct 1039663 A 1039663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212603085360