Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 seq7 93.3 3e-14 seq3 91.5 1e-13 >seq9 Length=1038790 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||| ||||||||||| ||||| || ||| | || | || ||| Sbjct 527359 ACCAGGTGCAATGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTCCGACCGTCTTCC 527300 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || || || || | ||| ||||| || | || | ||||||||||| | Sbjct 527299 AACTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGGGGAATACCCTCCTTGTCTTGA 527240 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | |||||| |||| || ||||| || Sbjct 527239 ATCTTGGACTTGACGTTGTCGATCGTGTCCGATGACTCAACCTCGAGCGTGATGGTCTTG 527180 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| | ||||| || |||||||||||| Sbjct 527179 CCCGTCAATGTCTTGACGAAGATCTGCATA 527150 Score = 98.7 bits (108), Expect = 6e-16 Identities = 133/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| |||| | || || ||||| |||||||| || Sbjct 527113 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 527054 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| ||||| || Sbjct 527053 ATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGAC--AT 526996 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || ||| || |||| ||| || ||||| |||||||||||||| Sbjct 526995 --TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTACCCGTGAGAGTCTT 526938 Query 34967 CAC 34969 || Sbjct 526937 GAC 526935 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||| | ||| | ||||| || ||||| ||||| ||||| | |||| | || | || | Sbjct 527588 AACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCGTCTT 527530 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | ||||| || || || || || || || ||||| || | || | || |||||||| Sbjct 527529 CGAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCT 527470 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||||| ||| ||| | || | || | | || || |||| ||| ||||||| Sbjct 527469 GAATCTTCGATTTAACGTTGTCGATGGTGTCGCTTGATTCGACCTCGAGGGTAATGGTTT 527410 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| | ||||| || |||||||||||| Sbjct 527409 TACCCGTCAAGGTCTTGACGAAGATCTGCATA 527378 >seq7 Length=1181343 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || || Sbjct 1039485 TTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATC 1039544 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| |||||||| | || | ||||||||||| ||||| ||||| | Sbjct 1039545 AATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1039604 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 |||| || || ||| || |||| ||| ||||| || |||||||| |||||||| || Sbjct 1039605 ATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCACGAA 1039663 >seq3 Length=3706406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | || ||||| || | ||| | ||| || ||||| ||||| ||||| || Sbjct 1555248 CCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1555189 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || ||||| || || || || |||||||| | || Sbjct 1555188 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 1555129 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | || | ||| || Sbjct 1555128 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1555069 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| || || || |||||||| ||||| || || |||||||| || Sbjct 1555068 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1555019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633485262312