Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq9 86.0 5e-12 seq2 86.0 5e-12 >seq4 Length=2575654 Score = 113 bits (124), Expect = 4e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834 ||||||||| | || ||||| | ||| || || |||||||| ||| ||||| || Sbjct 1168270 TCTGGGCTCGCGGTCCAGCTGCTCCCTCAACGCATCGACGTGATCTTTGTATACGTGTGC 1168211 Query 29835 GTCTCCCAGGGTGTGGACAAACTCTCCCGGTT-CTAGCCCGGTGACGTGAGCCATCATGT 29893 || |||| | ||| || ||||||| | | || ||||||||| | ||||| Sbjct 1168210 ATCGCCCATGACGTGCGTAAGG-CTCCCGGGCACCAAGTCGCAGACGTGAGCGAGCATGT 1168152 Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953 ||| ||||| | ||||||||||||||| ||||| ||||| || |||||||| | ||| | Sbjct 1168151 GCGTCAGGAGCGCGTAGCTGGCGATGTTGAAGGGCACCCCAAGGCCCATGTCGCACGATC 1168092 Query 29954 TCTGGTAGAGCTGACA 29969 |||||| |||||||| Sbjct 1168091 GCTGGTACAGCTGACA 1168076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || ||||||| | | ||| |||||||||||||| ||| ||| | Sbjct 1167974 TGTGGCATGGCGGGAGGGCCATGATGGAGAGGTCCTTGGGGTTCCAGGCCGACAGGATTA 1167915 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 |||||| ||| | || ||||| | | ||| | | | | |||||||| || | Sbjct 1167914 TGCGCCGGTCGTAAGGCTTGTTGCGCAGCTTGTCGATGACATCGGCGAGCTGATCGACTC 1167855 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 | |||| |||||| | | ||| ||| || || || || |||| |||||||| Sbjct 1167854 CTTGGCCCGTGTAGTCGGTTTTGGCATCCACGTAGTCGGCCCCAAAGTGCCGCCACTGGA 1167795 Query 30188 ACCCGTACACCGGTCCCAGGTCTCC 30212 | ||||| ||||| ||||| ||||| Sbjct 1167794 AGCCGTAGACCGGGCCCAGATCTCC 1167770 >seq9 Length=1038790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/181 (73%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTT 52075 |||||||||| | | ||||| ||| | ||| |||| ||||||||||| || || Sbjct 718745 CGTCAAGGTGCGCGTTAGGACGACCAAGATCCCCCAGATCGGCGACAAGTTCGCCTCCCG 718686 Query 52076 C-ACGGCGCAAAAGGGGACGTGCGGAGCC--GTCCTGACCCAGGAGGACATGCCCTTCGA 52132 | |||| |||||||| ||| ||||| | || | | ||||||||||||||| ||| | Sbjct 718685 CCACGGT-CAAAAGGGCACGATCGGAGTCACGTACCG--CCAGGAGGACATGCCGTTC-A 718630 Query 52133 CAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGA 52191 | | || || | |||||| |||||||||||||||||||| | || || | |||| Sbjct 718629 CGCGCGAGGGCCTCACACCCGACATCATCATCAACCCCCACGCCATCCCGTCGCGTATGA 718570 Query 52192 C 52192 | Sbjct 718569 C 718569 >seq2 Length=3830584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 52047 CCAGAGATGGGCGACAAGTTTGCGTCGTTC-ACGGCGCAAAAGGG-GACGTGCGGAGCCG 52104 || ||| ||||||||||||| |||| | ||||| |||||||| | ||| ||| | Sbjct 2012216 CCTGAGCTGGGCGACAAGTTCTCGTCCCGCCACGGC-CAAAAGGGCGTCGT-CGGCATCA 2012273 Query 52105 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52163 || || |||||||||||||||||||| | ||||| | |||||| ||| ||||||| Sbjct 2012274 TCGTGGACCAGGAGGACATGCCCTTCGCGGACAACGGGCT-GTGCCCGGACATCATCATG 2012332 Query 52164 AACCCCCACGCCTTTCCATCCAGGATGACCGT 52195 ||||| |||| || || ||| | ||||| || Sbjct 2012333 AACCCTCACGGTTTCCCGTCCCGAATGACAGT 2012364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617455579217