Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq9 136 4e-27 seq3 107 2e-18 seq7 93.3 4e-14 seq6 89.7 5e-13 >seq9 Length=1038790 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 ||| |||||||| || |||||||| ||| |||||| || |||| || ||||||||||| Sbjct 527576 CGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCGAGCTGCTTACC 527517 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 || || || | |||||||| || | ||||| || ||||||||| ||| || | || Sbjct 527516 AGCGAAGATAAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTCGATT 527458 Query 35659 CAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAG 35717 | |||| | | |||||||| ||||| ||||| | || || |||||||||||||| | Sbjct 527457 TAACGTTGTCGATGGTGTCGCTTGATTCGACCTCGAGGGTAATGGTTTTACCCGTCAAGG 527398 Query 35718 TTTTCACAAATATCTGCAT 35736 | || || || |||||||| Sbjct 527397 TCTTGACGAAGATCTGCAT 527379 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | ||| || || | || || || ||||| || ||||| Sbjct 526783 CTCCTTCTGGATGTTGTAATCCGACAAAGTGCGGCCATCCTCGAGTTGCTTGCCAGCAAA 526724 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | ||| | || |||||||||| |||||| ||||| | | Sbjct 526723 GATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 526664 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| |||||||| | ||||| || || || |||| ||| || || Sbjct 526663 GTCAATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGAC 526604 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 526603 GAAGATCTGCAT 526592 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||| || || || ||||| ||||||||||| |||| Sbjct 527377 CCACCACGCAGACGCAGGACCAGGTGCAATGTCGATTCCTTCTGAATGTTGTAGTCGGAG 527318 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| |||| |||||| ||||| || ||||| |||||||| || | ||| Sbjct 527317 AGGGTCCGACCGTCTTCCAACTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGGGGA 527258 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||||| ||| | |||| | | |||||| || || || Sbjct 527257 ATACCCTCCTTGTCTTGAATCTTGGACTTGA-CGTTGTCGATCGTGTCCGATGACTCAAC 527199 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||| || || |||||||| || || || || |||||||| Sbjct 527198 CTCGAGCGTGATGGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 527151 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | |||||| |||| || |||||||| || || || Sbjct 527114 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 527055 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||| | || ||||||||| |||||| ||| | | | Sbjct 527054 GATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATT 526995 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||| | ||||| ||||||||||| | ||| || || Sbjct 526994 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTACCCGTGAGAGTCTTGAC 526935 >seq3 Length=3706406 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||| || | || | || |||||| || |||||||| |||| Sbjct 1555248 CCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1555189 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || || || || | ||||||||||| | || Sbjct 1555188 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 1555129 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||| | |||| | | |||||| || ||||| Sbjct 1555128 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 1555070 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || ||||| | || || || || |||||||| Sbjct 1555069 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1555022 >seq7 Length=1181343 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || | || || |||||||| || || || | Sbjct 1039483 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGA 1039542 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 1039543 TCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1039602 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||| | || || || |||||||| | || ||||| | Sbjct 1039603 CGATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCACGA 1039662 Query 35727 A 35727 | Sbjct 1039663 A 1039663 >seq6 Length=1530178 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/178 (72%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 41175 GATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGT- 41233 ||| | |||||||||||||||||||| ||||| |||| | | ||| | ||||| ||| Sbjct 918213 GATCCTCTCGAGGATCAGCTGCGCGATGCGATCGCCCTCCTTTACCGCGTAGTCCTCGTC 918272 Query 41234 --CGTTGTTGTTCACCATCACTATGCCCACGTTGCCCG-TGTAGTCGGGATCGATGACGC 41290 ||| |||| || || || || || || ||| |||||||| |||||||||| Sbjct 918273 GGCGTGGTTGAACAGCAGGACCTTGACC----TGTCCGCGGTAGTCGGCGTCGATGACGC 918328 Query 41291 CAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACC 41348 | || | ||||||| |||||| |||| || || || |||||||| || | ||| Sbjct 918329 CCGCGCCCGTGTCGATGAAGTGCTTGGACGCGAGGCCGGACCGGGGCGCAATGCGACC 918386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793436587320