Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq2 86.0 5e-12 seq9 82.4 6e-11 >seq4 Length=2575654 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 29848 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGC 29907 ||||||||| | || ||||| | ||| || || |||| ||| ||| ||||| || Sbjct 1168270 TCTGGGCTCGCGGTCCAGCTGCTCCCTCAACGCATCGACGTGATCTTTGTATACGTGTGC 1168211 Query 29908 GTCTCCCAGGTTGTGGACAAACTCTCCCGGTT-CTAGCCCGGTGACGTGAGCCATCATGT 29966 || |||| | ||| || ||||||| | | || ||||||||| | ||||| Sbjct 1168210 ATCGCCCATGACGTGCGTAAGG-CTCCCGGGCACCAAGTCGCAGACGTGAGCGAGCATGT 1168152 Query 29967 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 30026 ||| ||||| | ||||||||||||||| ||||| ||||| || |||||||| | ||| | Sbjct 1168151 GCGTCAGGAGCGCGTAGCTGGCGATGTTGAAGGGCACCCCAAGGCCCATGTCGCACGATC 1168092 Query 30027 TCTGGTAGAGCTGACA 30042 |||||| |||||||| Sbjct 1168091 GCTGGTACAGCTGACA 1168076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||| ||||| | ||||| ||||| || || || ||||||| | | ||| ||| Sbjct 1167993 ACGTAGAACTGGGCAAACATG---TGGCATGGCGGGAGGGCCATGATGGAGAGGTCCTTG 1167937 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 ||||||||||| ||| ||| ||||||| ||| | || ||||| | | ||| | | Sbjct 1167936 GGGTTCCAGGCCGACAGGATTATGCGCCGGTCGTAAGGCTTGTTGCGCAGCTTGTCGATG 1167877 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 | | |||||||| || || |||| |||||| | | ||| ||| || Sbjct 1167876 ACATCGGCGAGCTGATCGACTCCTTGGCCCGTGTAGTCGGTTTTGGCATCCACGTAGTCG 1167817 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 || || || |||| ||||||||| ||||| ||||| ||||| ||||| Sbjct 1167816 GCCCCAAAGTGCCGCCACTGGAAGCCGTAGACCGGGCCCAGATCTCC 1167770 >seq2 Length=3830584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 52761 CCAGAGATGGGCGACAAGTTTGCGTCGTTC-ACGGCGCAAAAGGG-GACGTGCGGAGCCG 52818 || ||| ||||||||||||| |||| | ||||| |||||||| | ||| ||| | Sbjct 2012216 CCTGAGCTGGGCGACAAGTTCTCGTCCCGCCACGGC-CAAAAGGGCGTCGT-CGGCATCA 2012273 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52877 || || |||||||||||||||||||| | ||||| | |||||| ||| ||||||| Sbjct 2012274 TCGTGGACCAGGAGGACATGCCCTTCGCGGACAACGGGCT-GTGCCCGGACATCATCATG 2012332 Query 52878 AACCCCCACGCCTTTCCCTCCAGGATGACCGT 52909 ||||| |||| || || ||| | ||||| || Sbjct 2012333 AACCCTCACGGTTTCCCGTCCCGAATGACAGT 2012364 >seq9 Length=1038790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/181 (72%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 52730 CGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTT 52789 |||||||||| | | ||| | ||| | ||| |||| ||||||||||| || || Sbjct 718745 CGTCAAGGTGCGCGTTAGGACGACCAAGATCCCCCAGATCGGCGACAAGTTCGCCTCCCG 718686 Query 52790 C-ACGGCGCAAAAGGGGACGTGCGGAGCC--GTCCTGACCCAGGAGGACATGCCCTTCGA 52846 | |||| |||||||| ||| ||||| | || | | ||||||||||||||| ||| | Sbjct 718685 CCACGGT-CAAAAGGGCACGATCGGAGTCACGTACCG--CCAGGAGGACATGCCGTTC-A 718630 Query 52847 CAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 52905 | | || || | |||||| |||||||||||||||||||| | || || | |||| Sbjct 718629 CGCGCGAGGGCCTCACACCCGACATCATCATCAACCCCCACGCCATCCCGTCGCGTATGA 718570 Query 52906 C 52906 | Sbjct 718569 C 718569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310256394668