Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 185 2e-41 seq9 183 7e-41 seq7 138 3e-27 seq8 96.9 8e-15 >seq3 Length=3706406 Score = 185 bits (204), Expect = 2e-41 Identities = 176/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || ||||| ||||| || |||||||| || |||||||| || || | ||||| Sbjct 1555243 ACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1555184 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| ||||| || ||||| || || | || Sbjct 1555183 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCC 1555124 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 1555123 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1555064 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||||||||| |||||||| ||||| || || | |||||| || Sbjct 1555063 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1555019 >seq9 Length=1038790 Score = 183 bits (202), Expect = 7e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| ||||| || |||||||| || |||||||| ||||||| | || Sbjct 526812 CGAAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGACAAAGTG 526753 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || || |||||||| || ||||| |||||||| ||||||||||| | || Sbjct 526752 CGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCC 526693 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| ||||| || || |||||||| || || |||||||| Sbjct 526692 TCCTTGTCCTGGATCTTGGACTTCACATTGTCAATGGTGTCGGACGACTCCACCTCGAGG 526633 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || |||||||| || || | |||||| Sbjct 526632 GTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 526592 Score = 163 bits (180), Expect = 7e-35 Identities = 176/229 (77%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || |||||| | || |||||||| || ||| ||| || |||||||| || || | ||| Sbjct 527603 TCCACGAAGACGGAGAACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAA 527544 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || | | || ||||| |||||||| || |||||||||||||| || || |||||||||| Sbjct 527543 GG-TGCGACCGTCTTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGATCAGGAGGAA 527485 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAA 211065 |||||||||||||| ||||| ||| ||||| ||||||||||| ||| ||| | Sbjct 527484 TGCCTTCCTTGTCCTGAATCTTCGATTTAACGTTGTCGATGGTGTC---GCTTGATTCGA 527428 Query 211066 CCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||| || || || || ||||| | ||||| || || | |||||| Sbjct 527427 CCTCGAGGGTAATGGTTTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 527379 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || |||||||| || || | ||||| | || || Sbjct 527134 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 527075 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| ||||| | || |||||||| Sbjct 527074 TCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 527015 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||| || |||||||| ||||| || Sbjct 527014 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTT 526955 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || |||||||||||||| || Sbjct 526954 TTACCCGTGAGAGTCTTGAC 526935 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| | || || || || || ||||| || || | ||||||| || ||| Sbjct 527362 AGGACCAGGTGCAATGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTCCGACCGTCT 527303 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||| || | || || || ||||| |||| || |||||||| Sbjct 527302 TCCAACTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGGGGAATACCCTCCTTGTCT 527243 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| || ||||||||||| ||||| ||| Sbjct 527242 TGAATCTTGGACTTGACGTTGTCGATCGTGTCCGATGACTCAACCTCGAGCGTGATGGTC 527183 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 527182 TTGCCCGTCAATGTCTTGACGAAGATCTGCAT 527151 >seq7 Length=1181343 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||||| |||||||| ||||||||||| |||||||| Sbjct 1039485 TTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATC 1039544 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || || | || ||||||||||||||||| || || || ||| Sbjct 1039545 AATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1039604 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || |||||||| || || ||||| |||||||| ||||| || || Sbjct 1039605 ATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCACGAA 1039663 >seq8 Length=1130364 Score = 96.9 bits (106), Expect = 8e-15 Identities = 188/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| | |||||| ||||||||||| ||| ||| || |||||| |||||||| Sbjct 757914 TTCCTAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTACAGCATGAAGGGGT 757855 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 | || ||| | || ||| |||| ||| | ||| |||| ||| || || | |||| Sbjct 757854 TGCCGGTCTCCGTCTGGGCCTCGAGGATGGAGTACCACAGCTTCTGCGCACGAATGGTCT 757795 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | | | || || || |||||||||| ||| || ||||||| || | || ||| Sbjct 757794 TGCGGCCACGGCCCTCCTTTTCGTACTTTTCGTACAGGGCCTCGAACTCTTGGCCGTAGC 757735 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACT-GACCGTCTTCCTTC 178324 || |||| ||||| || |||||||| | ||| |||| | || ||||| | Sbjct 757734 AGTCGGCGAGGCCGGGGCATTCGTTGGGGCACATGAGCGTCCAGTCGAGGTTCTTC-TCG 757676 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 || || ||||||||||| || | | |||||| ||| Sbjct 757675 ACACGCTTCATGAAGAGATCGGGGATCCAGAGGGC 757641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151569302585