Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 149 1e-30 seq9 134 3e-26 >seq3 Length=3706406 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || |||||||| |||||||| ||||| || || |||| ||||| |||| | || Sbjct 1555243 ACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1555184 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || |||||||| || || || Sbjct 1555183 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCC 1555124 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 1555123 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1555064 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | || || | ||| | ||||| || Sbjct 1555063 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1555019 >seq9 Length=1038790 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| ||||| || || |||| ||||| |||| | |||| || || Sbjct 527134 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 527075 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || |||||||| || || || ||||||||| Sbjct 527074 TCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 527015 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| |||| || || || | ||||| || Sbjct 527014 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTT 526955 Query 225682 TTGCCCGTCAAAGTTTT 225698 || ||||| | ||| || Sbjct 526954 TTACCCGTGAGAGTCTT 526938 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| ||||| | || ||||| || || | ||||| |||| | || Sbjct 527372 ACGCAGACGCAGGACCAGGTGCAATGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGGGT 527313 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| || ||||| || | ||| || || || || |||||||| Sbjct 527312 CCGACCGTCTTCCAACTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGGGGAATACC 527253 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| ||| || ||||| ||||| || | || || || | Sbjct 527252 CTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCCGATGACTCAACCTCGAG 527193 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||||||||||||| || || | ||| | ||||| Sbjct 527192 CGTGATGGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 527151 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || ||| || || |||| ||||| ||| ||| || Sbjct 527600 ACGAAGACGGAGAACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGT 527541 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||||||||| || || || || || ||||| || Sbjct 527540 GCGACCGTCTTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGATCAGGAGGAATGCC 527481 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| || || ||||||||||| | ||| || || | Sbjct 527480 TTCCTTGTCCTGAATCTTCGATTTAACGTTGTCGATGGTGTCGCTTGATTCGACCTCGAG 527421 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || |||||||| || || | ||| | ||||| Sbjct 527420 GGTAATGGTTTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 527379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530756900126