Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9 125 2e-23 seq3 120 7e-22 seq7 93.3 1e-13 >seq9 Length=1038790 Score = 125 bits (138), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || || ||||| || ||||||||||| |||| | |||| || || Sbjct 527135 GAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTC 527076 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||||||||| || | ||||||||| | | ||| || ||||| Sbjct 527075 CTCGAGCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTG 527018 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || |||||| | || | | |||| || ||| || || || || || Sbjct 527017 TCTTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATT 526958 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGA 152094 ||||| |||||||||||||| |||| Sbjct 526957 GTTTTACCCGTGAGAGTCTTGACGA 526933 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || |||||||||||||| | ||||| | ||||| Sbjct 526804 GAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGACAAAGTGCGGCCATC 526745 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | |||||||| | | ||| || ||||| || Sbjct 526744 CTCGAGTTGCTTGCCAGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTGTC 526685 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| | || | | |||| || ||| || || || || || || Sbjct 526684 CTGGATCTTGGACTTCACATTGTCAATGGTGTCGGACGACTCCACCTCGAGGGTGATGGT 526625 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||||| |||||| Sbjct 526624 CTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 526592 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| || || || ||| || ||||||||||| ||| || || | || || Sbjct 527591 GAGAACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTC 527532 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || ||||||||||| | |||||| || | | || |||||||| || Sbjct 527531 TTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTC 527472 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAAT 152068 ||||| || ||| || | || | | |||| ||| || || || || ||||| Sbjct 527471 CTGAATCTTCGATTTAACGTTGTCGATGGTGTCGCTTGA---TTCGACCTCGAGGGTAAT 527415 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| | ||||| ||||||| |||||| Sbjct 527414 GGTTTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 527379 >seq3 Length=3706406 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || ||||| || || || || ||||| || ||||||||||| |||| | || | Sbjct 1555239 AGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1555180 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || ||||||||||| || | ||||||||| | | ||| || ||| Sbjct 1555179 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 1555120 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 1555119 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 1555060 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || || || |||||||| ||||| ||||| | |||||| || || Sbjct 1555059 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 1555016 >seq7 Length=1181343 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | |||||||| || || ||||||||||| Sbjct 1039485 TTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATC 1039544 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||| | | ||| || ||||| || || || || |||||| | || Sbjct 1039545 AATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1039604 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| || ||| || || || ||||| || || |||||||| ||||||||||| Sbjct 1039605 ATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCACGAA 1039663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820371283459