Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9 168 1e-36 seq3 165 2e-35 seq7 138 2e-27 >seq9 Length=1038790 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || || || ||| || || ||||||||||| | Sbjct 527378 ACCACCACGCAGACGCAGGACCAGGTGCAATGTCGATTCCTTCTGAATGTTGTAGTCGGA 527319 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || || || | || || || || || ||||| || || || ||| || Sbjct 527318 GAGGGTCCGACCGTCTTCCAACTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGGGG 527259 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||||||| ||||| | || ||| | ||||| |||||||| | || || Sbjct 527258 AATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCCGATGACTCAAC 527199 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 527198 CTCGAGCGTGATGGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 527151 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || ||||| | ||| || || |||||||||||||| | Sbjct 527150 ACCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 527091 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 527090 GAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 527031 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||||| | || || | ||||| ||||| || | ||||| Sbjct 527030 GATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 526971 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| || |||||||| | |||||| |||| Sbjct 526970 CTCGAGGGTGATTGTTTTACCCGTGAGAGTCTTGACGA 526933 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | ||| || || ||||||||||| || | Sbjct 526819 ACCACCGCGAAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 526760 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||||||||| ||||| || || |||||||| | ||||| |||||| || Sbjct 526759 CAAAGTGCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGGCGTTGCTGGTCAGGAGG 526700 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | || || ||||| || | || || Sbjct 526699 GATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCAATGGTGTCGGACGACTCCAC 526640 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 526639 CTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 526592 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || ||||| || || || || || || | |||||| || || |||||||||||||| | Sbjct 527605 CCTCCACGAAGACGGAGAACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 527546 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || || || || || || || || ||||| | || || || ||| || Sbjct 527545 AAG-GTGCGACCGTCTTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGATCAGGAGG 527487 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| || ||||| | ||| ||| | ||||| ||||| | |||||| Sbjct 527486 AATGCCTTCCTTGTCCTGAATCTTCGATTTAACGTTGTCGATGGTGTCGCTTGATTCGAC 527427 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || || ||||||||||| ||||| ||||| |||||||| Sbjct 527426 CTCGAGGGTAATGGTTTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 527379 >seq3 Length=3706406 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| | || || || || | ||| || || |||||||||||||| | Sbjct 1555249 ACCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1555190 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| ||||| | || || ||||| || Sbjct 1555189 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGG 1555130 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 1555129 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1555070 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 1555069 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1555019 >seq7 Length=1181343 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || |||||||| || || || || ||||| |||||| Sbjct 1039485 TTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATC 1039544 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 1039545 AATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1039604 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| ||||| || || ||||||||||| | ||||| ||||| Sbjct 1039605 ATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCACGAA 1039663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738811070966