Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9 145 5e-30 seq3 140 2e-28 seq7 118 8e-22 >seq9 Length=1038790 Score = 145 bits (160), Expect = 5e-30 Identities = 162/211 (77%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || ||||| |||||||||||||| ||||||||||| ||| | || || || |||| || Sbjct 527587 ACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTG-CGACCGTCTTC 527529 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | ||||||||||| | ||| | |||||||| ||| Sbjct 527528 GAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTG 527469 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| | || || ||| | ||||||||| ||||| ||||| | ||||| || | Sbjct 527468 AATCTTC-GATTTAACGTTGTCGATGGTGTCGCTTGATTCGACCTCGAGGGTAATGGTTT 527410 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | |||||| |||||||| ||||| Sbjct 527409 TACCCGTCAAGGTCTTGACGAAGATCTGCAT 527379 Score = 123 bits (136), Expect = 2e-23 Identities = 149/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| ||||||||||| |||| ||| || |||| || Sbjct 527131 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCG 527072 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| ||||||||| || | ||| | || ||||| || Sbjct 527071 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGG 527012 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| ||| || ||||| | || || || | Sbjct 527011 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTT 526954 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | |||||||| ||||| |||| Sbjct 526953 TACCCGTGAGAGTCTTGACGA 526933 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| |||||||||||||| | | ||| | || || Sbjct 526800 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGACAAAGTGCGGCCATCCTCG 526741 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | || ||||| || | ||| | || ||||| ||| Sbjct 526740 AGTTGCTTGCCAGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGG 526681 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||||| || |||||||| | || || |||||| Sbjct 526680 ATCTTGGACTTCACATTGTCAATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTT 526621 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||| |||||||| |||||| Sbjct 526620 CCGGTCAGAGTCTTGACGAAGATCTGCATG 526591 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||||| | || ||||| || |||||||| || Sbjct 527381 CATACCACCACGCAGACGCAGGACCAGGTGCAATGTCGATTCCTTCTGAATGTTGTAGTC 527322 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || |||| |||| |||||| || || || ||||| ||||||||||| | Sbjct 527321 GGAGAGGGTCCGACCGTCTTCCAACTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGG 527262 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| || ||||| ||| | | | || ||||| | || || Sbjct 527261 GGGAATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCCGATGACTC 527202 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||| || ||||| ||||| | ||||| |||||||| ||||| Sbjct 527201 AACCTCGAGCGTGATGGTCTTGCCCGTCAATGTCTTGACGAAGATCTGCAT 527151 >seq3 Length=3706406 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| |||| || ||||| || ||| |||||| ||||||||||| |||| | Sbjct 1555248 CCACCACGCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1555189 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| ||||| ||||| | |||||||| || | || Sbjct 1555188 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 1555129 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||| | | | |||||||||| || |||||| Sbjct 1555128 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1555069 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || |||||||| |||||||||||||| ||||| || ||||| Sbjct 1555068 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1555022 >seq7 Length=1181343 Score = 118 bits (130), Expect = 8e-22 Identities = 137/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| ||||| |||| Sbjct 1039483 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGA 1039542 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 1039543 TCAATCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1039602 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | ||||| ||||| ||||||||||||||||| Sbjct 1039603 --CGATCGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTCAC 1039660 Query 44326 GAA 44328 ||| Sbjct 1039661 GAA 1039663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990272765893