Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 163 7e-35 seq9 161 2e-34 seq7 149 2e-30 >seq3 Length=3706406 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 1555025 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 1555084 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1555085 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 1555144 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 1555145 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 1555204 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || || || || |||| || Sbjct 1555205 CAGAAGGAGTCCACCCTCCACCTCGTCCTGAGGCT 1555239 >seq9 Length=1038790 Score = 161 bits (178), Expect = 2e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || |||||||| || ||||| |||||||||||||| || ||| |||||||||| Sbjct 526933 TCGTCAAGACTCTCACGGGTAAAACAATCACCCTCGAGGTCGAGTCCTCCGACACCATCG 526992 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||| || ||||| || || |||||||| |||||||| || || | Sbjct 526993 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTGA 527052 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||||||||| |||||||| || || | || || |||| || ||| |||| || | Sbjct 527053 TCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 527112 Query 178111 AATCAACACTGCATCTTGT 178129 | || || || ||||| || Sbjct 527113 AGTCCACCCTCCATCTCGT 527131 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||||||||||||||| || ||| Sbjct 526595 CAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCGTCCGAC 526654 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||| || || |||||||| ||||||||| Sbjct 526655 ACCATTGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAA 526714 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || ||||| ||||| | ||| | | ||||| ||| || Sbjct 526715 CGCCTCATCTTTGCTGGCAAGCAACTCGAGGATGGCCGCACTTTGTCGGATTACAACATC 526774 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 526775 CAGAAGGAGTCCACCCTCCACCTCGT 526800 Score = 140 bits (154), Expect = 8e-28 Identities = 160/211 (76%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || ||||| || || | || || ||||| || ||||||||||| || |||| Sbjct 527382 CAGATCTTCGTCAAGACCTTGACGGGTAAAACCATTACCCTCGAGGTCGAATCAAGC--- 527438 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| ||||| ||| |||||||||||||| ||||| || ||||| || ||| Sbjct 527439 GACACCATCGACAACGTTAAATCGAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 527498 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 || || ||||||||||| || || ||||||||||| || | || |||| ||| || || Sbjct 527499 CAGCGCCTTATCTTCGCTGGTAAGCAGCTCGAAGACGGTCGCAC-CTTGAGCGACTACAA 527557 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | |||| || || || ||||| |||||| Sbjct 527558 CATCCAGAAGGAGAGCACGCTGCACCTTGTT 527588 >seq7 Length=1181343 Score = 149 bits (164), Expect = 2e-30 Identities = 141/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || ||||| || || || || ||||||||||| || ||| ||||| || Sbjct 1039664 TTTCGTGAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACGAT 1039605 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| || |||||||| ||| | Sbjct 1039604 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGATT 1039545 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||||||||| |||| || |||| || ||| |||| || Sbjct 1039544 GATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGGACCCTCTCCGACTACAACATCCAGAA 1039485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730752738626