Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Exophiala_20alcalophila_20[genbank_20GCA_5F001599775.1_202016-03-01]
12 sequences; 29,853,552 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 3e-21
seq1 93.3 4e-14
seq3 91.5 1e-13
seq6 89.7 4e-13
>seq5
Length=3814559
Score = 116 bits (128), Expect = 3e-21
Identities = 268/402 (67%), Gaps = 5/402 (1%)
Strand=Plus/Plus
Query 44786 ATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATGAAAAGATA 44845
|| |||||| | |||| || || || ||||| ||||||| || | || || ||
Sbjct 1110866 ATTCCCTGCATCCGCAAGAAAGCTGATTGGGCAATGAAGTGGATCGCGGACAAAGAGTCG 1110925
Query 44846 ACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGT 44905
| || ||| ||||| ||||||| ||||| ||||||||| | ||||| |||||
Sbjct 1110926 AGCTTCGCCCAACGACTGGTCGCGTTCGCTGCTGTCGAAGGCATCTTCTTCTCGGGTTCC 1110985
Query 44906 TTTGCGGCGATATTTTACATGAAAACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAAC 44965
|| || | || || | |||| | |||||| | |||||||| |||||||| ||||
Sbjct 1110986 TTCGCCTCCATCTTCTGGTTGAAGAGCAAGGGTCTCATGCCCGGTCTGACGTTCTCCAAC 1111045
Query 44966 GAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCTCTACTATAATACG 45025
|| | || || | || || ||| |||| ||| ||||||||||||| | | || |
Sbjct 1111046 GAGCTCATCTCTCGCGATGAGGGTATGCATACCGACTTTGCCTGCCT----TCTCATGCA 1111101
Query 45026 AGA-GTCGATCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGTGGC 45084
| | | | || ||| |||| || | | | ||||| || ||| || || |
Sbjct 1111102 ACATCTGAAGCACAAGCCGGACCCGAAGCTCATTGAAGACATCGTCACCGCGGCTGTCGT 1111161
Query 45085 CATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACGCGAA 45144
||||||| ||| || | | || |||||||| | || | || |||||||| ||
Sbjct 1111162 GATCGAGAAGGAGTTCCTGACCGATGCTCTGCCTTGTGCCCTGCTCGGCATGAACGCCAA 1111221
Query 45145 TATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCT 45186
| ||| | ||||||| ||||| ||||| || || || ||
Sbjct 1111222 GCTTATGCAACAGTACATCGAGTTCGTCGCTGACCGCCTGCT 1111263
>seq1
Length=6490813
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||||||| || || |||||| || || || || ||| ||||
Sbjct 4921716 TTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCAAGTTGCTTGCCGGCGAAGATC 4921657
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| |||||||| |||||||| ||||| |||||||| || || || || | |||
Sbjct 4921656 AGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 4921597
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| ||||| | ||||||||||| ||| | || ||||| || || || || || ||
Sbjct 4921596 ATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 4921538
>seq3
Length=4818847
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | || ||| |||||||| | || ||| || || |||||||||||
Sbjct 1795906 ACCACCACGAAGTCGCAAGACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGA 1795965
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| ||| || ||| || ||||| || ||||| |||| | ||||| || || || ||
Sbjct 1795966 GAGAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGG 1796025
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
||||||||||||||| || || || || | |||| ||||| | || ||
Sbjct 1796026 AATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATAGTGTCAGAAGATTCCAC 1796085
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| | ||| | ||| ||||| || ||||| || || || || |||||
Sbjct 1796086 CTCCAGGGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 1796133
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | ||| | ||| | |||| ||| || || || || |||||||||||
Sbjct 1796133 TACCACCTCGCAGTCTGAGCACAAGATGGAGTGTCGATTCCTTCTGGATGTTGTAATCAG 1796192
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| || | |||||| || || || || ||| |||| || ||||| || ||||| |
Sbjct 1796193 AGAGTGTTCTGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGG 1796252
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || ||||||||| || || || || | |||| |||||| | ||||
Sbjct 1796253 GAATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCTGACGATTCGA 1796312
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | ||| | || |||||||| || || || || || ||||||||
Sbjct 1796313 CTTCCAGGGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 1796361
>seq6
Length=3558010
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| ||||| |||||||| ||| || ||||| || |||
Sbjct 445100 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCG 445159
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|| || || || ||| |||| || || ||||| |||||||| || || |||||||||||
Sbjct 445160 AGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGGAATTCCTTCCTTGTCTGT 445218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830336552304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |