Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20alcalophila_20[genbank_20GCA_5F001599775.1_202016-03-01] 12 sequences; 29,853,552 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq1 93.3 4e-14 seq3 91.5 1e-13 seq6 89.7 4e-13 >seq5 Length=3814559 Score = 116 bits (128), Expect = 3e-21 Identities = 268/402 (67%), Gaps = 5/402 (1%) Strand=Plus/Plus Query 44786 ATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATGAAAAGATA 44845 || |||||| | |||| || || || ||||| ||||||| || | || || || Sbjct 1110866 ATTCCCTGCATCCGCAAGAAAGCTGATTGGGCAATGAAGTGGATCGCGGACAAAGAGTCG 1110925 Query 44846 ACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGT 44905 | || ||| ||||| ||||||| ||||| ||||||||| | ||||| ||||| Sbjct 1110926 AGCTTCGCCCAACGACTGGTCGCGTTCGCTGCTGTCGAAGGCATCTTCTTCTCGGGTTCC 1110985 Query 44906 TTTGCGGCGATATTTTACATGAAAACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAAC 44965 || || | || || | |||| | |||||| | |||||||| |||||||| |||| Sbjct 1110986 TTCGCCTCCATCTTCTGGTTGAAGAGCAAGGGTCTCATGCCCGGTCTGACGTTCTCCAAC 1111045 Query 44966 GAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCTCTACTATAATACG 45025 || | || || | || || ||| |||| ||| ||||||||||||| | | || | Sbjct 1111046 GAGCTCATCTCTCGCGATGAGGGTATGCATACCGACTTTGCCTGCCT----TCTCATGCA 1111101 Query 45026 AGA-GTCGATCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGTGGC 45084 | | | | || ||| |||| || | | | ||||| || ||| || || | Sbjct 1111102 ACATCTGAAGCACAAGCCGGACCCGAAGCTCATTGAAGACATCGTCACCGCGGCTGTCGT 1111161 Query 45085 CATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACGCGAA 45144 ||||||| ||| || | | || |||||||| | || | || |||||||| || Sbjct 1111162 GATCGAGAAGGAGTTCCTGACCGATGCTCTGCCTTGTGCCCTGCTCGGCATGAACGCCAA 1111221 Query 45145 TATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCT 45186 | ||| | ||||||| ||||| ||||| || || || || Sbjct 1111222 GCTTATGCAACAGTACATCGAGTTCGTCGCTGACCGCCTGCT 1111263 >seq1 Length=6490813 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||||||| || || |||||| || || || || ||| |||| Sbjct 4921716 TTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCAAGTTGCTTGCCGGCGAAGATC 4921657 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| |||||||| ||||| |||||||| || || || || | ||| Sbjct 4921656 AGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 4921597 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||| | ||||||||||| ||| | || ||||| || || || || || || Sbjct 4921596 ATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 4921538 >seq3 Length=4818847 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | || ||| |||||||| | || ||| || || ||||||||||| Sbjct 1795906 ACCACCACGAAGTCGCAAGACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGA 1795965 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || ||| || ||||| || ||||| |||| | ||||| || || || || Sbjct 1795966 GAGAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGG 1796025 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||||||||| || || || || | |||| ||||| | || || Sbjct 1796026 AATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATAGTGTCAGAAGATTCCAC 1796085 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | ||| ||||| || ||||| || || || || ||||| Sbjct 1796086 CTCCAGGGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 1796133 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||| | ||| | |||| ||| || || || || ||||||||||| Sbjct 1796133 TACCACCTCGCAGTCTGAGCACAAGATGGAGTGTCGATTCCTTCTGGATGTTGTAATCAG 1796192 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | |||||| || || || || ||| |||| || ||||| || ||||| | Sbjct 1796193 AGAGTGTTCTGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGG 1796252 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| || || || || | |||| |||||| | |||| Sbjct 1796253 GAATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCTGACGATTCGA 1796312 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || |||||||| || || || || || |||||||| Sbjct 1796313 CTTCCAGGGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 1796361 >seq6 Length=3558010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| ||||| |||||||| ||| || ||||| || ||| Sbjct 445100 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCG 445159 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || || ||| |||| || || ||||| |||||||| || || ||||||||||| Sbjct 445160 AGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGGAATTCCTTCCTTGTCTGT 445218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830336552304