Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20alcalophila_20[genbank_20GCA_5F001599775.1_202016-03-01] 12 sequences; 29,853,552 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 192 1e-43 seq1 138 2e-27 seq6 123 5e-23 >seq3 Length=4818847 Score = 192 bits (212), Expect = 1e-43 Identities = 168/208 (81%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || || || |||||||| ||||| |||||||| || ||||| || | Sbjct 1796154 CAAGATGGAGTGTCGATTCCTTCTGGATGTTGTAATCAGAGAGTGTTCTGCCATCCTCAA 1796213 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||| |||||||| || || | ||||||||||| ||||| |||||||||||||| | Sbjct 1796214 GTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGAATTCCTTCCTTGTCTTGGA 1796273 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | |||||| ||||||||||||| ||||| ||||||| ||| ||||| || | Sbjct 1796274 TCTTGGACTTGACATTGTCGATGGTGTCTGACGATTCGACTTCCAGGGTAATGGTCTTGC 1796333 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || |||||||||||||| |||||||| Sbjct 1796334 CGGTTAGGGTCTTGACGAAGATCTGCAT 1796361 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| |||||||| || ||| ||| || |||||||| ||||| ||| Sbjct 1795907 CCACCACGAAGTCGCAAGACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGAG 1795966 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || | || |||||||| || ||| Sbjct 1795967 AGAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGA 1796026 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| | ||||||| ||||| ||||| | ||||| || Sbjct 1796027 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATAGTGTCAGAAGATTCCACC 1796086 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||| || || || || ||||| ||||||||||| || ||||| Sbjct 1796087 TCCAGGGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 1796133 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || || || || || |||||||| || ||| Sbjct 1796363 CCACCACGGAGGCGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGCTC 1796422 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || ||||| || || | ||| ||||| || ||| Sbjct 1796423 AAGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGGGGA 1796482 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| || ||||| | ||||||| |||||||| || ||| || || || Sbjct 1796483 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATC-GCTGGACTCGAC 1796541 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| |||||||||||||| |||||||| Sbjct 1796542 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 1796589 Score = 143 bits (158), Expect = 5e-29 Identities = 157/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| || |||||||| || ||| Sbjct 1796591 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1796650 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || || ||||| || || | || ||||| || ||| Sbjct 1796651 AGGGTGCGGCCATCTTCGAGTTGTTTACCTGCGAAGATAAGGCGCTGCTGGTCAGGAGGA 1796710 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| |||||||| | ||||||| |||||||| || ||| || || || Sbjct 1796711 ATGCCTTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATC-GCTGGACTCAAC 1796769 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| |||||||||| Sbjct 1796770 CTCGAGGGTGATGGTCTTTCCCGTGA 1796795 >seq1 Length=6490813 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||| || || | ||||| || | ||||| |||||||| || Sbjct 4921716 TTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCAAGTTGCTTGCCGGCGAAGATC 4921657 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| || |||||||| || |||||||||||||| || ||||| | ||||||| ||| Sbjct 4921656 AGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 4921597 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || |||||||||||||| ||||| Sbjct 4921596 ATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 4921538 Score = 87.8 bits (96), Expect = 3e-12 Identities = 247/378 (65%), Gaps = 1/378 (0%) Strand=Plus/Plus Query 176029 GGCGCTTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTAAATC 176088 ||||||| | |||||| |||||||| | || ||||| |||||| | ||| | | Sbjct 2518567 GGCGCTTGAGATTGTCCACGATATCTTCAGGATTGTAGTTGGGAATGGAGGAGCTCCAAC 2518626 Query 176089 CTGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAGTATT 176148 | || || || || | ||||| || |||| | ||||| |||||||||| | Sbjct 2518627 CAGTACCAATACCATCGGCACCATTGACGAGGACCATCGGGACAACGGGAACATAGACCT 2518686 Query 176149 CCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCCTTGT 176208 | ||||| ||| | | ||||||| | || |||| || ||||||| || || Sbjct 2518687 CTGGTTCGATCTTCTTGTCGTCATCAGTGTTATATGTCAGAAGTGGCTCGTCAGCGGGGT 2518746 Query 176209 GGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGT 176268 |||| | | || | || || || | ||||| || || | ||| ||| | Sbjct 2518747 GGAAGAGTTTTCGTGCAAATGGCGATAGACGGGTGAAAATGTAACGAGCGCTGGCAGAAT 2518806 Query 176269 CCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTAT 176328 | ||||||| ||| || | ||| ||||| || || | |||||||||||| | Sbjct 2518807 CGCTGCCTCCCTGATTTCGCGTACCAAATTGGCCAGACGGTTCTAACAAATTGATGTTGT 2518866 Query 176329 TCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGT 176388 |||| ||||| || ||||||| || || |||| |||||| || | ||| |||| Sbjct 2518867 TCGATCCCACAAAGGTCTGGGCCAGGCCAACAATGGTTTGCTGGAGGGATGTCTCTCCGT 2518926 Query 176389 GGTGATA-GCCGGCGTTC 176405 |||| || |||| | ||| Sbjct 2518927 GGTGGTAGGCCGTCATTC 2518944 >seq6 Length=3558010 Score = 123 bits (136), Expect = 5e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || |||||||||| |||||||| || || ||||| ||||||||||| || ||||| Sbjct 445081 TCCACCACGAAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 445140 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || ||||| | ||||| |||||||| || || | ||| |||||||| || Sbjct 445141 CAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGG 445200 Query 68354 AATGCCTTCCTTGTCT 68369 ||| |||||||||||| Sbjct 445201 AATTCCTTCCTTGTCT 445216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622261756640