Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20alcalophila_20[genbank_20GCA_5F001599775.1_202016-03-01] 12 sequences; 29,853,552 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 122 9e-23 seq1 104 3e-17 >seq3 Length=4818847 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| ||||| || | ||||||||||| || || |||||||||| ||||| || | Sbjct 1795919 CGCAAGACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGGCCA 1795978 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || | |||||| ||||| | || | || ||||||| Sbjct 1795979 TCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGAATGCCCTCCTTG 1796038 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| || |||| ||| | | | ||||| |||||||| || | || || Sbjct 1796039 TCTTGGATCTTCGACTTGA-CGTTGTCGATAGTGTCAGAAGATTCCACCTCCAGGGTAAT 1796097 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || ||||| || ||||||||||| Sbjct 1796098 CGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 1796133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| ||| |||||| || || ||||| || ||| || || | || || Sbjct 1796609 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCTTCG 1796668 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || ||||| ||||| || || ||||||||||| | || | || ||||||||| || Sbjct 1796669 AGTTGTTTACCTGCGAAGATAAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC-TG 1796727 Query 42120 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 | | || | |||| ||| | | | || ||||| || || || |||| |||||||| | Sbjct 1796728 AATCTTCGACTTGA-CGTTGTCGATGGTATCGCTGGACTCAACCTCGAGGGTGATGGTCT 1796786 Query 42178 TGCCCGT 42184 | ||||| Sbjct 1796787 TTCCCGT 1796793 >seq1 Length=6490813 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || ||| || || | || || || ||||| || ||||| | Sbjct 4921718 CCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCAAGTTGCTTGCCGGCGAAGA 4921659 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | |||||||||||||||| || | || ||||||||| ||| || |||| ||| | Sbjct 4921658 TCAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 4921600 Query 42139 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||| ||| || || |||| |||||||| |||||||| || ||||| || Sbjct 4921599 TCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 4921540 Query 42198 AAGATTTGCATTTTCA 42213 ||| | | ||||||| Sbjct 4921539 AAGCTGT-AATTTTCA 4921525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212718518080