Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20alcalophila_20[genbank_20GCA_5F001599775.1_202016-03-01] 12 sequences; 29,853,552 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 224 1e-53 seq1 145 8e-30 >seq5 Length=3814559 Score = 224 bits (248), Expect = 1e-53 Identities = 474/699 (68%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||| || | ||| || |||| |||||| |||||| | || || || ||||| Sbjct 1504021 GAGACGTACAACCTCATGTCTCAGAAGTGCTTTACTCACGCCTCTCCCACTCTCTTCAAT 1504080 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 ||||| ||| ||| || ||| ||||| |||||| || | | |||||||| ||| Sbjct 1504081 GCTGGAACGCCTCAACCCCAGCTGTCGTCATGCTTCTTGATCGATATGAAGGACGACAGC 1504140 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| ||||||||||| || |||||| |||||| ||||||||| | || ||| Sbjct 1504141 ATCGAGGGCATCTACGACACCCTCAAGATTTGTGCCATGATCTCCAAGACTGCCGGAGGT 1504200 Query 53423 ATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 ||||| | || ||| | | ||||||| | ||| | ||| || || || || Sbjct 1504201 ATCGGCCT-CAATGCCCATTGCATCCGTGCCACCGGTTCCTACATCTCTGGTACTAATGG 1504259 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | | || | || || | || ||||| ||||||||||||||||| || || || || | Sbjct 1504260 CACCTCCAACGGTCTCATTCCCATGCTTCGCGTCTTCAACAACACTGCTCGCTATGTTGA 1504319 Query 53542 CCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||||| ||||| | ||| | | || |||||||| || ||||| |||||||| | Sbjct 1504320 CCAGGGTGGCAACAAGCGTCCAGGTG-CCTTTGCCATCTATCTGGAGCCATGGCACGCTG 1504378 Query 53601 ACATTATGGAGTTTCTCGAGC-TGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 || | | || |||| || | || | |||||| || | |||||| | || || Sbjct 1504379 ACGTCTTTGA-CTTCTTGAACTTGAGAAAGAATCACGGCAAAGAAGAGGTCCGAGCACGC 1504437 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||| |||| || || |||| |||||| || |||||| | || |||||| || | Sbjct 1504438 GACTTGTTCTATGCCCTCTGGACTCCGGATCTTTTCATGAAGCGTGTCGAGAAGAACCAA 1504497 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 || ||| ||| | || || |||| ||| || ||| | |||||||| || || Sbjct 1504498 GACTGGACTCTGTTCTGTCCCCACGAAGCCCCGGGTCTCGCCGACGTCTACGGGGACGAA 1504557 Query 53780 TTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 || | | |||| || |||| | |||||| ||| ||||||| Sbjct 1504558 TTCGAGGCCCTGTACGAGAAATACGAGAAAGAAGGCCGCGGGCGTCAGACCATCAAGGCC 1504617 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| | || ||||| || ||| ||||| || || || ||||| | Sbjct 1504618 CAGAAGCTGTGGTACGCGGTCCTCGAGGCACAGACCGAGACTGGTACCCCATACATCCTC 1504677 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||||||||| | |||| |||||||||||||||||||| Sbjct 1504678 TACAAGGATGCTTGCAACAAGAAGAGCAACCAGAAGAAC 1504716 Score = 96.9 bits (106), Expect = 4e-15 Identities = 298/450 (66%), Gaps = 17/450 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| || || |||||||| || || || | |||||| |||||||| Sbjct 1505242 CGCAACTCTCTCCTCGTTGCACCCATGCCAACTGCATCCACTTCGCAGATCTTGGGCAAC 1505301 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| |||||||| ||||| | ||||||||| ||| || | || |||||| Sbjct 1505302 AACGAATGTTTCGAGCCATACACCTCGAACATCTACTCGCGTCGTGTGTTGGCTGGTGAG 1505361 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| ||| | ||||||||| | | ||| | Sbjct 1505362 TTCCAAGTCGTCAACCCATGGCTCCTGAAGGACCTGGTCGACCTTGGTCTCTGGTCCGAC 1505421 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCC 55719 | || |||| || || | || |||| || || |||||||| || | ||| Sbjct 1505422 AACATGAAGAATCGCATCATCGCCG--ACGGTGGCTCTGTCCAGAACATCCCCAACATCC 1505479 Query 55720 TCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG-TCTGATT 55777 || | |||||| | ||| ||| || |||||||| || | | | | | | Sbjct 1505480 CGGCCGATATCAAGGCCCTCTACAAGACTGTCTGGGAGATCAGCCA-ACGTGCTGTTCTC 1505538 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC---TTC 55834 | ||| ||| || || || || | |||||| |||||||| |||||||||||| || Sbjct 1505539 CAGATGGCTGCCGACCGAGGCGCTTTCATCGATCAGTCCCAATCTCTGAACATCCATCTC 1505598 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGG-TGGAAGAAGGG 55893 | |||| || | ||| |||| | | ||||||||| ||| |||| ||||||| ||| Sbjct 1505599 AAGGAG---CCAACGATGGGCAAGATCACCTCGATGCA-TTTCGCGGGCTGGAAGATGGG 1505654 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||||||| || |||||||| || || || Sbjct 1505655 TCTCAAGACTGGCATGTACTACCTCCGTAC 1505684 >seq1 Length=6490813 Score = 145 bits (160), Expect = 8e-30 Identities = 318/471 (68%), Gaps = 8/471 (2%) Strand=Plus/Plus Query 117134 GGAACGTAGCAGCTGAACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGC 117193 |||| | || |||| | ||||| || ||||| || |||||||| | || | |||||| Sbjct 2518608 GGAATGGAGGAGCTCCAACCAGTACCAATACCATCGGCACCATTGACGAGGACCATCGGG 2518667 Query 117194 ACGACAGGAACGTAGAACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGC 117253 || || ||||| |||| ||| || || | || | |||| || ||| || | || Sbjct 2518668 ACAACGGGAACATAGACCTCTGGTTCGATCTTCTTGTCGTCATCAGTGTTATATGTCAGA 2518727 Query 117254 ACCGCATTGTCACTCGGATCGAATATGTTCTTGGTCCAC--GGTGCTAGGCGAGTGAAAA 117311 | | | |||| || | ||| | ||| || || || || | ||| || ||||||| Sbjct 2518728 AGTGGCTCGTCAGCGGGGTGGAAGA-GTT-TTCGTGCAAATGGCGATAGACGGGTGAAAA 2518785 Query 117312 TGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCG 117371 ||||||||| ||| |||| ||| |||| || | |||||||| ||||| ||| || Sbjct 2518786 TGTAACGAGCGCTGGCAGAATCGCTGCCTCCCTGATTTCGCGTACCAAATTGGCCAGACG 2518845 Query 117372 GCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTAC 117431 | || || | || | |||||| | ||||||||| | || |||| | ||||| || Sbjct 2518846 GTTCTAACAAATTGATGTTGTTCGATCCCACAAAGGTCTGGGCCAGGCCAACAATGGTTT 2518905 Query 117432 CTTGGAGGCTCGCCTCACCATGGTGATACGCCGTC--TGCTCCGCCACGTAGCCCGCCAG 117489 |||||| | ||| || ||||| || |||||| | ||||| || | || || || Sbjct 2518906 GCTGGAGGGATGTCTCTCCGTGGTGGTAGGCCGTCATTCCTCCG--ACCAAACCAGCGAG 2518963 Query 117490 CTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549 | || || ||||| || | ||| ||| |||| ||||||| | || || || || Sbjct 2518964 TTCGGCGACTTTCATATCCTTCTTCAAGTTTCGTTTGAAGCAGGCAAACATGACTTTCCG 2519023 Query 117550 CTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||| | || |||| ||||| | ||| |||||||| || || |||| Sbjct 2519024 CTGGCCCGGTTTCAAGCCATCGACGACGGAGGGGATCGATCGAATGTTGTC 2519074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215917917600