Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 172 7e-38 seq6 113 5e-20 >seq2 Length=8083196 Score = 172 bits (190), Expect = 7e-38 Identities = 626/968 (65%), Gaps = 30/968 (3%) Strand=Plus/Plus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 || || ||||| || || || ||||||| || | | |||| | ||||| ||||| Sbjct 1632924 GAGGCAAGATTGCAGACTGCAACCTCATCAGGTGCGGTGTATTCGACAATCTCTGTGCAC 1632983 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 | || || | ||| ||||| | ||| | || || ||||| ||||| ||||||||| Sbjct 1632984 AAGTTGGAACTCCGGATTGTTCCCAGATTCTTCTGGTTGCTCTTCTTGTTGCACGCATCC 1633043 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890 |||||||| ||| ||||||| ||||| || | || || || | ||| || | ||| | Sbjct 1633044 TTATAAAGCATGTATGGCGTCCCAGTCTCGGTTTGAGACTCGAGAATGGCATACCACAGC 1633103 Query 53891 ACACGAGCCTTTATTATAGATTTGT--ATCTCTT--TTCTCTTTCGTATAGTGTATACAA 53946 | ||||| || | | ||| | ||| | ||| | ||||| || | Sbjct 1633104 TTCTGGGCCTTGAT----GGTCTGTCGACCTCGTCCTTCCTTCTCGTACTTCTCGTAGAG 1633159 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 | || |||||||| || | |||| | | ||||| || | || || | | Sbjct 1633160 TGCCTCGAACTCGTCACCGTAGACATCAGCAAGACCAGGGGCCTCGTGTGGGCAGAAGAG 1633219 Query 54007 CGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 54063 | ||| ||| | || |||| || || | ||| |||||||| || ||||||| || Sbjct 1633220 TGTCCAGTCT---TGATTCTTCTCAACACGCTGCATGAAGAGATCCGGGGTCCAAAGGGC 1633276 Query 54064 -TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 54122 || || || || | | ||| ||| || || || |||||| || | | | Sbjct 1633277 GTAGAACAAG-TCACGTGCTCTGACTTCTTCCTTGCCGTGGTTCTTTCGCAGGTTCAAAA 1633335 Query 54123 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGT 54182 | | | | |||| ||||| ||||| | ||| |||| | | | || || || |||| Sbjct 1633336 AGTCAAAGACGTCAGCGTGCCATGGTTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGT 1633395 Query 54183 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 54242 | || || || || | |||| |||||||| || |||| | || ||| ||||| | || Sbjct 1633396 TGCCACCTTGGTCGACATATCGGGCGGTGTTGTTGAAAACACGCAGCATGGGAATGAGAC 1633455 Query 54243 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAAT 54300 | ||||| | ||||||||| |||| || || || | || || || | | || Sbjct 1633456 CGTTGGAGGTACCATTGGTGCCGGCAATGTAAGAACCGGTTGCCCGGATGCAGTGAGCAT 1633515 Query 54301 TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 54360 || || || || || || || | || ||||| | || || || | || || || Sbjct 1633516 TG--AGTCCAATGCCGCCAGCAGTCTTGGAGATCATGGCACAGATCTTGAGAGTGTCGTA 1633573 Query 54361 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 54420 ||| ||||| || ||||| ||| |||||| || | || || |||| |||| | Sbjct 1633574 GATACCCTCAATGCTATCTTCCTTCATGTCAATCAAGAAGCATGAGGACAGTTGGGCTTG 1633633 Query 54421 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 54480 | || || || || || | || || |||||||| ||||| || || | ||| | || Sbjct 1633634 AGGTGTGCCGGCGTTGAAGAGAGTCGGGGAAGCGTGTGTAAAACACTTCTGAGACATGAG 1633693 Query 54481 ATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACAC 54536 |||||||||| ||||| || | ||| || | |||| || || | |||| Sbjct 1633694 GTTGTACGTCTGAATAGCCTTCTCGACATCGTCGCCGTGGATG----CCAACGGACACAC 1633749 Query 54537 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTG-TTGTTTATTTTCAGCAAGTAGGAT 54595 |||| | ||| ||||| |||| ||| | | |||| ||| || || |||| ||| ||| Sbjct 1633750 GCATGAGCATATGCTGTGGTCGTTCCGC-AACTTGCTTGCCAATCTTGAGCAGGTATGAT 1633808 Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACT 54655 |||||| || || || ||||| || | ||| |||||||| || || | |||| | Sbjct 1633809 CTTTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCATAGACAATAGCC 1633868 Query 54656 GAGTTGAG 54663 ||||| || Sbjct 1633869 GAGTTCAG 1633876 >seq6 Length=1840879 Score = 113 bits (124), Expect = 5e-20 Identities = 228/338 (67%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 24117 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 24176 ||||| | | || || || || || ||| ||| | |||||||| | || | | Sbjct 490718 AAATGCTGCATCAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGT 490659 Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 || ||||| || || || |||||||| || || | || ||||| || |||||||| Sbjct 490658 TCATTGGAGAAGGTCAGGCCGGGCATCAGACCCTTGCTCTTCAGCCAGAAGATGGACGCG 490599 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296 || || || || |||||||| || || || || || || || | |||| || | | Sbjct 490598 AAAGAGCCGGAGAAGAAAATACCCTCGACGGCGGCGAACGCCACGAGTCGTTGGGCGAAG 490539 Query 24297 CCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 24353 | || | |||| |||||||| ||||||||||| ||||| | || || Sbjct 490538 CTGGACTCCTTGTCCGAGATCCACTTCAATGCCCAATCGGCTTTCTTGCGGATGCAGGGA 490479 Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 || || || || |||| ||||||||| | || | || || || | || || ||| Sbjct 490478 ATCGTGTCAATGGCATCAAAGAGATACTGCTTCTGTTTGGGGTCGTTGATGTACGTGTCA 490419 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 24451 ||||||||||| ||||| ||||| || ||||| ||||| Sbjct 490418 ATCAAAAGACTGTACATCTCCGAGTGGATGTTCTCAAT 490381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721325403760