Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4 116 2e-21 seq3 89.7 3e-13 >seq4 Length=4536433 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || ||||| || | ||| ||| ||||| |||||||||||||| Sbjct 671213 CCACCACGAAGTCTGAGTACCAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAA 671272 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||||||||| || | || || ||||| || Sbjct 671273 AGAGTTCGGCCGTCTTCGAGTTGCTTGCCTGCGAAGATCAATCGTTGTTGGTCTGGTGGG 671332 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| || | | | | || | || | |||||| || Sbjct 671333 ATACCCTCCTTGTCTTGGATCTTGGATTTCACGTTGTCAATAGTGTCTGACGATTCTACA 671392 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||||||||||||||| || || ||||| ||||| Sbjct 671393 TCCAGGGTGATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 671439 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || || || || || ||||||||| |||||||| ||| | Sbjct 671441 CCGCCACGGAGTCGGAGGACGAGATGCAAGGTGGATTCTTTCTGGATGTTGTAATCGCTC 671500 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || ||| |||| || | ||||| || ||||| || || |||||||||||| || Sbjct 671501 AAGGTG-CGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 671559 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| || | | | | || | |||| |||||||||| Sbjct 671560 AATGCCTTCCTTGTCTTGAATCTTGGATTTGACGTTGTCGATGGTATCGCTCGATTCGAC 671619 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| ||||| |||||||| ||||| || || ||||| ||||| Sbjct 671620 CTCGAGCGTAATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 671667 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || |||||||||| ||| | || || || ||||| ||||||||||| || Sbjct 670985 CCACCGCGAAGTCTCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAT 671044 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||| |||||||| || || || | ||||| ||||| ||| Sbjct 671045 AGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGA 671104 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | || || || Sbjct 671105 ATGCCTTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGACTCCACT 671164 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || ||||| || |||||||||||||| Sbjct 671165 TCTAAAGTGATCGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 671211 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236 || |||| ||||| |||| ||| || || |||||||||||| | || || ||| |||| Sbjct 671684 AGAACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTG-CGGCCGTC 671742 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||| || ||||| || || |||||||||||| || | || |||||||| Sbjct 671743 TTCAAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTC 671802 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| || | || | | || | ||| |||||||||| || | ||||||||| Sbjct 671803 CTGGATCTTGGATTTGACATTGTCAATGGTGTCGCTCGATTCGACCTCGAGCGTGATGGT 671862 Query 34357 TTTGCCGGTGA 34367 || ||||||| Sbjct 671863 CTTTCCGGTGA 671873 >seq3 Length=7540789 Score = 89.7 bits (98), Expect = 3e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || |||||||| | ||| || ||||| |||||||||||||| Sbjct 3360428 TCCACCACGCAGGCGGAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 3360369 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || |||| |||| || | |||||||| ||||| ||||| || |||||||| | ||| Sbjct 3360368 GAGAGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGCTGGTCTGGCGG 3360309 Query 34281 GCACGCTCTCCTTGTC 34296 | | || |||||||| Sbjct 3360308 G-ATGCCTTCCTTGTC 3360294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071854314720