Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 210 3e-49 seq6 113 6e-20 >seq2 Length=8083196 Score = 210 bits (232), Expect = 3e-49 Identities = 745/1150 (65%), Gaps = 32/1150 (3%) Strand=Plus/Plus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || || ||||| || || || ||||||| || | | |||| | ||||| ||||| Sbjct 1632924 GAGGCAAGATTGCAGACTGCAACCTCATCAGGTGCGGTGTATTCGACAATCTCTGTGCAC 1632983 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | || || | ||| ||||| | ||| | || || ||||| ||||| ||||||||| Sbjct 1632984 AAGTTGGAACTCCGGATTGTTCCCAGATTCTTCTGGTTGCTCTTCTTGTTGCACGCATCC 1633043 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 63127 |||||||| ||| |||| || ||||| || | ||||| || | ||| || | ||| | | Sbjct 1633044 TTATAAAGCATGTATGGCGTCCCAGTCTCGGTTTGAGACTCGAGAATGGCATACCACAGC 1633103 Query 63128 GACTCGAGCCTTTATTATAGATTTGT--ATCTC--CTTTCTCTTTCGTATAGAGTATACA 63183 || | ||||| || | | ||| | ||| | ||| | ||||| || | Sbjct 1633104 TTCT-GGGCCTTGAT----GGTCTGTCGACCTCGTCCTTCCTTCTCGTACTTCTCGTAGA 1633158 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCA 63243 | ||||||||||| || | |||| | | | ||| || | || || | | Sbjct 1633159 GTGCCTCGAACTCGTCACCGTAGACATCAGCAAGACCAGGGGCCTCGTGTGGGCAGAAGA 1633218 Query 63244 ACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 | ||| ||| | || |||| || || | ||| |||||||| || ||||||| | Sbjct 1633219 GTGTCCAGTCT---TGATTCTTCTCAACACGCTGCATGAAGAGATCCGGGGTCCAAAGGG 1633275 Query 63301 C-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 | || || || || | || ||| ||| || || || |||||| || | | Sbjct 1633276 CGTAGAACAAG-TCACGTGCTCTGACTTCTTCCTTGCCGTGGTTCTTTCGCAGGTTCAAA 1633334 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 || | | | |||| ||||| ||||| | ||| ||||| | | | || || || ||| Sbjct 1633335 AAGTCAAAGACGTCAGCGTGCCATGGTTCAAGGTAGATGGCAAAAGCACCTGGACGCTTG 1633394 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || || || || | |||| |||||||| || |||| | || ||| ||||| | | Sbjct 1633395 TTGCCACCTTGGTCGACATATCGGGCGGTGTTGTTGAAAACACGCAGCATGGGAATGAGA 1633454 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAA 63537 ||||| || |||||||||| |||| || || || | || || || | | | Sbjct 1633455 CCGTTGGAGGTACCATTGGTGCCGGCAATGTAAGAACCGGTTGCCCGGATGCAGTGAGCA 1633514 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 ||| || || || || || || | || ||||| | || || || | ||||| | Sbjct 1633515 TTG--AGTCCAATGCCGCCAGCAGTCTTGGAGATCATGGCACAGATCTTGAGAGTGTCGT 1633572 Query 63598 AGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63657 |||| || || |||||||| || |||||| || | || || |||| |||| Sbjct 1633573 AGATACCCTCAATGCTATCTTCCTTCATGTCAATCAAGAAGCATGAGGACAGTTGGGCTT 1633632 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63717 ||| || || || || || | || || |||||||| ||||| || || | ||| | | Sbjct 1633633 GAGGTGTGCCGGCGTTGAAGAGAGTCGGGGAAGCGTGTGTAAAACACTTCTGAGACATGA 1633692 Query 63718 GATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACA 63773 | |||||||||| |||||| || | ||| || | |||| || || | ||| Sbjct 1633693 GGTTGTACGTCTGAATAGCCTTCTCGACATCGTCGCCGTGGATG----CCAACGGACACA 1633748 Query 63774 CGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGAT 63833 ||||| | ||| ||||| |||| ||| ||| || ||| || || | || ||| ||| Sbjct 1633749 CGCATGAGCATATGCTGTGGTCGTTCCGCAACTTGCTTGCCAATCTTGAGCAGGTATGAT 1633808 Query 63834 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63893 |||||| || || || ||||| || | ||| |||||||| || || | |||| || Sbjct 1633809 CTTTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCATAGACAATAGCC 1633868 Query 63894 GAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT-GGTAATACTTGAAATAATCGG 63952 || || |||| || || ||| | || || || | ||| |||||| || || Sbjct 1633869 GAGTTCAGCTCCTCTGCATGTTTCATGAC-ATGCCCGTAGGTCTCGTCTGAAATCATAGG 1633927 Query 63953 AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAA 64012 || |||| || || ||||| ||||||| | | | ||| | ||| | || Sbjct 1633928 GGAGGGTTTGTTGTTCTTGGGATTCACATAGTGGTAGAGATCAGAGACCACGGAAGAGAA 1633987 Query 64013 TAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATA 64072 | | || || || | |||||| || || || | || || | ||| || || ||||| || Sbjct 1633988 TTGCTTCTTAGTCTGCTTGTGGAGGTTGGAGACAGCAATACGGGCTGCAAGGATGGCGTA 1634047 Query 64073 ATCCGGATGT 64082 || |||||| Sbjct 1634048 GTCGGGATGT 1634057 >seq6 Length=1840879 Score = 113 bits (124), Expect = 6e-20 Identities = 228/338 (67%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAAT 33623 ||||| | | || || || || || ||| ||||| |||||||| | || | | Sbjct 490718 AAATGCTGCATCAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGT 490659 Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 || || || || || || |||||||| || || | || ||||| || ||||| ||| Sbjct 490658 TCATTGGAGAAGGTCAGGCCGGGCATCAGACCCTTGCTCTTCAGCCAGAAGATGGACGCG 490599 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743 || || ||||| ||||| || || || || || || || || | |||| | | | Sbjct 490598 AAAGAGCCGGAGAAGAAAATACCCTCGACGGCGGCGAACGCCACGAGTCGTTGGGCGAAG 490539 Query 33744 CCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 | || | |||| |||||||| ||||||||||| ||||| | || || Sbjct 490538 CTGGACTCCTTGTCCGAGATCCACTTCAATGCCCAATCGGCTTTCTTGCGGATGCAGGGA 490479 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 ||||| || ||||||| ||||||||| | || | || || || | || || || Sbjct 490478 ATCGTGTCAATGGCATCAAAGAGATACTGCTTCTGTTTGGGGTCGTTGATGTACGTGTCA 490419 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33898 ||||||||||| ||||| ||||| || ||||| ||||| Sbjct 490418 ATCAAAAGACTGTACATCTCCGAGTGGATGTTCTCAAT 490381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817308709360