Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4 167 6e-36 seq2 114 3e-20 >seq4 Length=4536433 Score = 167 bits (184), Expect = 6e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| ||||| ||||||| ||| ||| || ||||| || ||||||| Sbjct 671213 CCACCACGAAGTCTGAGTACCAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAA 671272 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||| || ||||||||||||| || ||||| |||| Sbjct 671273 AGAGTTCGGCCGTCTTCGAGTTGCTTGCCTGCGAAGATCAATCGTTGTTGGTCTGGTGGG 671332 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || | ||||||||| || |||| || ||||||||| Sbjct 671333 ATACCCTCCTTGTCTTGGATCTTGGATTTCACGTTGTCAATAGTGTCTGACGATTCTACA 671392 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || ||||| |||||||||||||| || ||||| Sbjct 671393 TCCAGGGTGATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 671439 Score = 163 bits (180), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||||| || |||||||| | ||| |||||| ||||| || || | Sbjct 671437 CATG-CCGCCACGGAGTCGGAGGACGAGATGCAAGGTGGATTCTTTCTGGATGTTGTAAT 671495 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || | ||||| |||||||| | ||| ||||| ||||||||||| ||||| || Sbjct 671496 CGCTCAAGGTGCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGG 671555 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || || || || || | ||| ||||| || || | ||||||||||| Sbjct 671556 GAGGAATGCCTTCCTTGTCTTGAATCTTGGATTTGACGTTGTCGATGGTATCGCTCGATT 671615 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || |||||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 671616 CGACCTCGAGCGTAATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 671667 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| ||||| || || | || | ||||| || || || || || ||||| Sbjct 670982 TGACCACCGCGAAGTCTCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCA 671041 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || || || ||||| || || || ||||||| |||||||| ||| Sbjct 671042 GATAGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGG---TCT 671098 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||| || ||||| || |||| || ||||| || || | || || Sbjct 671099 GGGGGAATGCCTTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGAC 671158 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||||||||| || |||||||||||||| || |||||||| Sbjct 671159 TCCACTTCTAAAGTGATCGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 671211 Score = 123 bits (136), Expect = 6e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || |||||| | ||||| |||||||| | ||| ||||| ||||| Sbjct 671704 TTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCGTCTTCAAGTTGCTTTCCGGCGAA 671763 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || || || ||||| || |||||||| || | ||| || || Sbjct 671764 GATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGATTTGACATT 671823 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 || || | ||||||||||| || ||||||||||| ||||| ||||| Sbjct 671824 GTCAATGGTGTCGCTCGATTCGACCTCGAGCGTGATGGTCTTTCCGGT 671871 >seq2 Length=8083196 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | |||||| || || || | || || ||||| |||| |||||||| Sbjct 3687720 CCACCTCGCAATCTAAGCACAAGGTGCAGGGTTGACTCCTTTTGAATATCATAGTCGGAA 3687779 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || |||||||| |||||||||||||||| || |||||| |||| Sbjct 3687780 AGAGTTCTACCATCCTCTAATTGCTTTCCTGCGAAGATCAACCGTTGTTGATCTGGTGGG 3687839 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| || | || || || || | || ||||| ||||| || Sbjct 3687840 ATGCCCTCCTTATCTTGGATCTTAGACTTGACATTGTCGACAGTGTCGCTGGATTCGACC 3687899 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 || || || || ||||| ||||| Sbjct 3687900 TCAAGTGTAATGGTCTTGCCGGT 3687922 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || |||||| | ||||| || || || | ||| || || ||||||||| Sbjct 5300564 TTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATC 5300505 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || |||||||||||| || || ||||| || | || || || || Sbjct 5300504 AGGCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTAACATTGTCG 5300445 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| ||| || || || || ||||| ||||| || ||||| ||||||||||| Sbjct 5300444 ATCGTATCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 5300386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653840770086