Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 141 9e-29 seq4 109 5e-19 seq2 96.9 3e-15 >seq6 Length=1840879 Score = 141 bits (156), Expect = 9e-29 Identities = 343/514 (67%), Gaps = 13/514 (3%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CC 52385 || ||| | ||||| || || | |||||| ||||||||||| | |||| | || Sbjct 490480 CCCTGCATCCGCAAGAAAGCCGATTGGGCATTGAAGTGGATCTCG---GACAAGGAGTCC 490536 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 | | ||| | || | ||||| |||||| |||||||| | || || |||||| Sbjct 490537 AGCTTCGCCCAACGACTCGTGGCGTTCGCCGCCGTCGAGGGTATTTTCTTCTCCGGCTCT 490596 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || || ||||||| | | || | || || | |||||||||||||| ||| ||| Sbjct 490597 TTCGCGTCCATCTTCTGGCTGAAGAGCAAGGGTCTGATGCCCGGCCTGACCTTCTCCAAT 490656 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGAC 52564 || | || ||||||||||| || ||||||| |||||||| ||||| || | || Sbjct 490657 GAACTCATCTCGCGCGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTGATGCA---- 490712 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 || ||| | || || | | |||| ||| ||| || || |||| Sbjct 490713 GCATTTGAAGCACAAGGCAGACCCCGCGCTGATCGAACACATCATCACCGAAGCCGTGGG 490772 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 ||||| ||||| || | || | || || || |||| ||| |||| |||||||| | Sbjct 490773 CATCGAGAAGGAATTCCTGACCGATGCTCTTCCCGTCGGCCTGTTGGGAATGAACGCCAA 490832 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCC 52744 | ||| ||||||||||||| || || || || ||| || | | | ||||| | Sbjct 490833 GCTGATGCAACAGTACATCGAGTTCGTCGCCGACCGCCTGCTGCT-CGCCCTGGGCAACA 490891 Query 52745 AAAG-TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 | | || |||||| | || || || || ||| | ||||| ||||| | ||||| Sbjct 490892 AGCGCGTCTACAACGCCCAGAACCCCTTCCCCTTCATGGAGAACATCTCGCTCGCGGGCA 490951 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||| || |||||||| || |||||||| || Sbjct 490952 AGACCAATTTCTTCGAGAAACGTGTCGGCGACTA 490985 >seq4 Length=4536433 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || |||| | || |||||||| ||||||||||||||| Sbjct 671669 CCACCACGGAGACGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTC 671728 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || ||||| || |||| |||| || ||||| ||||| ||||| Sbjct 671729 AAGGTGCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGA 671788 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | |||| || | ||||||| |||| || || Sbjct 671789 ATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTG-TCAATGGTGTCGCTCGATTCGAC 671847 Query 138567 CTCGACCGT 138575 ||||| ||| Sbjct 671848 CTCGAGCGT 671856 Score = 105 bits (116), Expect = 7e-18 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| | ||| || ||||| | ||| || |||| | | Sbjct 671020 CTCCTTCTGAATGTTGTAGTCAGATAGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAA 671079 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | ||||||||||| || || || ||||| ||||| ||| | || | || | | Sbjct 671080 GATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC-CTGAATCTTCGACTTGACGT 671138 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | |||||||| || | || | ||| || ||||||||||| || Sbjct 671139 TG-TCAATGGTGTCCGAGGACTCCACTTCTAAAGTGATCGTCTTTCCAGTCAGAGTCTTG 671197 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 671198 ACAAAGATCTGCAT 671211 >seq2 Length=8083196 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| |||||||||||||||| ||| || ||||||||||| || |||| ||| Sbjct 5300566 CCTTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGA 5300507 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| |||||||| || || ||||| ||||| ||| || || | |||| Sbjct 5300506 TCAGGCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTAACATTG- 5300448 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | || || | |||||| ||||| | || | || || || ||||| || || || Sbjct 5300447 TCGATCGTATCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 5300388 Query 138604 AA 138605 || Sbjct 5300387 AA 5300386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262170478640