Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 159 8e-34 seq2 127 5e-24 >seq4 Length=4536433 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | || || ||||||||||| || || || || ||||| |||| |||||||| Sbjct 671222 AGTCTGAGTACCAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGG 671281 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || |||||||| ||||| ||||||||||| | ||||||||||||||| || || || || Sbjct 671282 CCGTCTTCGAGTTGCTTGCCTGCGAAGATCAATCGTTGTTGGTCTGGTGGGATACCCTCC 671341 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || || ||||| ||||| ||||| || ||| || || ||||| Sbjct 671342 TTGTCTTGGATCTTGGATTTCACGTTGTCAATAGTGTCTGACGATTCTACATCCAGGGTG 671401 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||| || ||||| | |||||| Sbjct 671402 ATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 671439 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || | ||| || ||| ||| || ||||| ||||| || | ||||| | Sbjct 670994 AGTCTCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGATAGAGTGCGG 671053 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | ||||| || || ||||| | ||| ||||||||||| ||||||||||| Sbjct 671054 CCATCCTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 671113 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||| |||||||||||||| |||||||| | || Sbjct 671114 TTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGACTCCACTTCTAAAGTG 671173 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||||||| |||| ||| || || || | ||||| Sbjct 671174 ATCGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 671211 Score = 131 bits (144), Expect = 4e-25 Identities = 152/201 (76%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||| ||||| || || ||||||||| |||| || | || ||||| || ||||| || Sbjct 671471 GTGGATTCTTTCTGGATGTTGTAATCGCTCAAG-GTGCGGCCGTCTTCAAGTTGCTTTCC 671529 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || || || ||||| |||||||||||||| ||||||||||| || || Sbjct 671530 GGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCTTGAATCTTGGATTT 671589 Query 195063 GACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||| || ||||| || ||| ||| || || || |||| ||||| || || | Sbjct 671590 GACGTTGTCGATGGTATCGCTCGA---TTCGACCTCGAGCGTAATGGTCTTGCCGGTAAG 671646 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||| || ||||| | |||||| Sbjct 671647 AGTCTTGACGAAGATTTGCAT 671667 Score = 111 bits (122), Expect = 3e-19 Identities = 141/190 (74%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| ||||| || || ||||| || ||||| ||| |||| || | || |||| Sbjct 671686 AACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAG-GTGCGGCCGTCTT 671744 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | || ||||| || |||||||| || || || ||||| |||||||||||||| ||||| | Sbjct 671745 CAAGTTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCT 671804 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCG 195106 | || || ||||| || ||||||||||| ||| ||| || || || || | | Sbjct 671805 GGATCTTGGATTTGACATTGTCAATGGTGTCGCTCGA---TTCGACCTCGAGCGTGATGG 671861 Query 195107 TCTTTCCTGT 195116 ||||||| || Sbjct 671862 TCTTTCCGGT 671871 >seq2 Length=8083196 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| |||||||||| || |||| ||||||||| ||||| || Sbjct 3687738 ACAAGGTGCAGGGTTGACTCCTTTTGAATATCATAGTCGGAAAGAGTTCTACCATCCTCT 3687797 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| ||||||||||| | |||||||| ||||| || ||||| || || ||||| Sbjct 3687798 AATTGCTTTCCTGCGAAGATCAACCGTTGTTGATCTGGTGGGATGCCCTCCTTATCTTGG 3687857 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || | ||||| ||| || ||||| |||| ||||| Sbjct 3687858 ATCTTAGACTTGACATTGTCGACAGTGTCGCTGGATTCGACCTCAAGTGTAATGGTCTTG 3687917 Query 195112 CCTGT 195116 || || Sbjct 3687918 CCGGT 3687922 Score = 96.9 bits (106), Expect = 8e-15 Identities = 238/358 (66%), Gaps = 6/358 (2%) Strand=Plus/Minus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAA-AAGCCCGGAGGTGATGACCTG 160570 ||||||| |||| ||||||||||| | | ||||||| || | ||| || || Sbjct 1633357 TGGCACGCTGACGTCTTTGACTTTTTGAACCTGCGAAAGAACCACGGCAAGGAAGA---A 1633301 Query 160571 ATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTG 160630 | ||||| | || | ||||||||| | ||||| | ||||| |||||| || | || Sbjct 1633300 GTCAGAGCACGTGACTTGTTCTACGCCCTTTGGACCCCGGATCTCTTCATGCAGCGTGTT 1633241 Query 160631 AAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTT 160690 | | ||| || |||| || ||||| || | || || ||||| |||| |||||| Sbjct 1633240 GAGAAGAATCAAGACTGGACACTCTTCTGCCCACACGAGGCCCCTGGTCTTGCTGATGTC 1633181 Query 160691 TATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAG 160750 || ||| |||||||||| | || || || | ||||| || || ||| ||| | || Sbjct 1633180 TACGGTGACGAGTTCGAGGCACTCTACGAGAAGTACGAGAAGGAAGGACGAGGTCGACAG 1633121 Query 160751 GTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATG 160810 | | |||||||| | |||||| || ||| || | | ||| |||| || | | Sbjct 1633120 ACCATCAAGGCCCAGAAGCTGTGGTATGCCATTCTCGAGTCTCAAACCGAGACTGGGACG 1633061 Query 160811 CCCTTTATCGCATACAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 || | || || |||||||| | ||||| ||||||||||| | |||| Sbjct 1633060 CCATACATGCTTTATAAGGATGCGTGCAACAAGAAGAGCAACCAGAAGAATCTGGGAA 1633003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481074036379