Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 152 6e-32 seq2 125 8e-24 seq3 98.7 1e-15 >seq4 Length=4536433 Score = 152 bits (168), Expect = 6e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||||||||| ||||| || ||||| || || | Sbjct 671667 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATTACGCTCGAGGTCGAATCGAGC 671608 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || | || ||||| |||||||| || |||||||| |||||| Sbjct 671607 GATACCATCGACAACGTCAAATCCAAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAG 671548 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || || |||||||| || || | || ||| | ||| || || || Sbjct 671547 CAGCGCCTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGCACCTTGAGC-GATTACAA 671489 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| | ||||| ||| | || || || || || Sbjct 671488 CATCCAGAAAGAATCCACCTTGCATCTCGTCCTCCGACTCCGTGGCGG 671441 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || ||| | || || ||||| Sbjct 671211 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAGACGATCACTTTAGAAGTGGAGTCCTCG 671152 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || |||||||||||||| || ||||| |||||||| Sbjct 671151 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 671092 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| || |||||| | ||||||| || || ||| | ||||| || Sbjct 671091 CAGCGATTGATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACTCTATCTGACTACAAC 671032 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| ||| || || | || || | ||||||||||| || Sbjct 671031 ATTCAGAAGGAGAGCACCCTCCACTTGGTGCTGAGACTTCGCGGTGGTCA 670982 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || |||||||| || || || || || || || || Sbjct 671439 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATCACCCTGGATGTAGAATCGTCA 671380 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || |||| | || || || ||||||||||| || || |||||||| Sbjct 671379 GACACTATTGACAACGTGAAATCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 671320 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || || || ||||||||||| || | || || || | ||||| || Sbjct 671319 CAACGATTGATCTTCGCAGGCAAGCAACTCGAAGACGGCCGAACTCTTTCCGACTACAAC 671260 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||||||||||||||| || | | ||||| ||||| Sbjct 671259 ATCCAGAAGGAATCCACTCTTCATCTGGTACTCAGACTTCGTGGTGG 671213 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||| || || | || | ||||| ||| | || | Sbjct 671871 ACCGGAAAGACCATCACGCTCGAGGTCGAATCGAGCGACACCATTGACAATGTCAAATCC 671812 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || |||||||| ||||||||||| || || || || || ||| Sbjct 671811 AAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGCCTGATCTTCGCCGGAAAG 671752 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||||| || || | || ||| | ||| ||||| || ||||||||||||| ||||| || Sbjct 671751 CAACTTGAAGACGGCCGCACCTTGAGC-GACTACAACATCCAAAAGGAATCTACTCTACA 671693 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| || ||||| Sbjct 671692 CTTGGTTCTCCGTCTCCGTGGTGG 671669 >seq2 Length=8083196 Score = 125 bits (138), Expect = 8e-24 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || |||||||| ||||| |||| || Sbjct 5300385 CTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCGGATACGAT 5300444 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || || |||||||| ||||| || || ||||||||||| || Sbjct 5300445 CGACAATGTTAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGCCT 5300504 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAA 27592 || || || || |||||||||||||||| || || | ||| ||||| || |||||| Sbjct 5300505 GATCTTCGCCGGCAAGCAACTCGAGGATGGCCGCACTTTGAGC-GACTACAACATCCAAA 5300563 Query 27593 AGG 27595 ||| Sbjct 5300564 AGG 5300566 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| ||||| |||||||| || || | || | | | ||| | ||| || Sbjct 3687922 ACCGGCAAGACCATTACACTTGAGGTCGAATCCAGCGACACTGTCGACAATGTCAAGTCT 3687863 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || |||||||| || || ||||| || || || | || || || || ||| Sbjct 3687862 AAGATCCAAGATAAGGAGGGCATCCCACCAGATCAACAACGGTTGATCTTCGCAGGAAAG 3687803 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||| | ||||||| | | || || | |||||| || | |||||||| || || || || Sbjct 3687802 CAATTAGAGGATGGTAGAACTCTTTCCGACTATGATATTCAAAAGGAGTCAACCCTGCAC 3687743 Query 27610 CTAGT 27614 || || Sbjct 3687742 CTTGT 3687738 >seq3 Length=7540789 Score = 98.7 bits (108), Expect = 1e-15 Identities = 289/442 (65%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || || ||||| ||| | ||||| || |||||| || || ||||| || ||| | Sbjct 2906686 CGATCAATTCCCTCCGTTGTCGACGGACTGAAGCCTGGCCAACGTAAGGTCATGTACACG 2906745 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| ||||| ||| || || |||||||| || | | || | || | | | Sbjct 2906746 TGCTTCAAGCGCAACTTGAAGAAGGACATGAAAGTAGTCGAATTGGCTGGTTTGATCGGG 2906805 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142 | | || || |||||||| || || ||||| || ||| || || || || ||| Sbjct 2906806 GGGATGACAGCATATCACCATGGTGACGCGTCACTACAGCAGACGATCGTTGGTCTCGCT 2906865 Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202 |||| ||||| || | || ||| | || | || || || ||||| || || || || Sbjct 2906866 CAGACTTTTGTGGGATCGAACAACGTTAATCTGCTAGAACCCTCTGGCCAATTCGGAACT 2906925 Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCG--TCTCGCAC 32260 || ||||| | || || || ||| |||||||||||||||| || | |||| | Sbjct 2906926 CGTAATCAAGGTGGAAGCGACGCCGCCAGCGCCCGTTACATCTTCACTCGGTTGTCGC-C 2906984 Query 32261 CTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATG 32320 || | | |||||| ||||| ||||||| ||||| | | | | |||||| || | Sbjct 2906985 GTTTG-CTCGCAAGCTTTTCCACCCGTCAGACGAGCCTCTTTTGACGTACAACACCGACG 2907043 Query 32321 ACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACG 32380 | | | || | | ||||| | | | || ||||| | || |||||| | || || | Sbjct 2907044 ATGATAAGAAGATTGAGCCCGAGGTGTATGTCCCGGTTGTCCCCATGATCCTTGTCAATG 2907103 Query 32381 GTGCAGAAGGCATCGGAACGGG 32402 | || || || ||||| || || Sbjct 2907104 GCGCTGATGGTATCGGGACCGG 2907125 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||| || || || ||||||||||| || || || || || || ||||||||||| Sbjct 3360294 GACAAGGAAGGCATCCCGCCAGACCAGCAACGCCTCATCTTCGCCGGCAAGCAACTCGAA 3360353 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||||| || | ||||| || |||| ||||| || ||||| || || ||| | Sbjct 3360354 GACGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTGCACCTGGTCCTC 3360413 Query 27619 CGTCTTCGCGGTGGA 27633 || || || |||||| Sbjct 3360414 CGCCTGCGTGGTGGA 3360428 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/199 (69%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 30355 GAAAAAATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAAC 30414 |||||||||| || ||||| | || ||||| ||||| | || | || ||||||||| Sbjct 2904964 GAAAAAATCTACATTCCCGAGATGATCTTTGGACACCTCCTTACCGGTTCAAACTACAAC 2905023 Query 30415 GACGAGGAGCAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAACGTT 30474 ||| | || ||| | || ||||| |||| || ||||||||||| ||| |||| || Sbjct 2905024 GACAACGAACAGAAGATCACAGGTGGTAGAAACGGTTACGGTGCAAAACTCTGCAACATT 2905083 Query 30475 TTCAGTTCCCTATTCAAAATCAAA-------ATTAGTGACGGGAAGAAGATATATGAGCA 30527 ||||| || |||| || || ||| || |||||||| ||| |||| Sbjct 2905084 TTCAGCACCGAGTTCATCCTCGAAACCTCCGATTCCAAAC-AGAAGAAGAAATACAAGCA 2905142 Query 30528 GACTTGGACAGATAACATG 30546 ||| ||||| | |||||| Sbjct 2905143 GACCTGGACCAACAACATG 2905161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310136231440