Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 127 5e-24 seq2 109 1e-18 seq3 87.8 4e-12 >seq4 Length=4536433 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||||||| || ||||||||||| || || || ||||||||||| |||| | ||||| Sbjct 671222 AGTCTGAGTACCAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGG 671281 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || || || |||||||| | | || ||||| | | ||| || ||| Sbjct 671282 CCGTCTTCGAGTTGCTTGCCTGCGAAGATCAATCGTTGTTGGTCTGGTGGGATACCCTCC 671341 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || ||| || | || | ||||||| ||||| || || || Sbjct 671342 TTGTCTTGGATCTTGGATTTCACGTTGTCAATAGTGTCTGACGATTCTACATCCAGGGTG 671401 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||||||||| ||||||| ||||| Sbjct 671402 ATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 671439 Score = 125 bits (138), Expect = 2e-23 Identities = 164/224 (73%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| ||||| | || || ||||| ||||||||||||||| || || | Sbjct 671449 GAGTCGGAGGACGAGATGCAAGGTGGATTCTTTCTGGATGTTGTAATCGCTCAAGGTGCG 671508 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || ||||| ||||||||||| || | ||||||||| | | || ||| Sbjct 671509 GCCGTCTTCAAGTTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCT 671566 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCA 152060 ||||| |||||||| || |||||| | || | | | || ||| || || || Sbjct 671567 TCCTTGTCTTGAATCTTGGATTTGACGTTGTCGATGGTATC---GCTCGATTCGACCTCG 671623 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || |||||||| ||||||| ||||| Sbjct 671624 AGCGTAATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 671667 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || |||||||| || |||||||||||||| ||| || || | Sbjct 671677 GAGACGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCG 671736 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || ||||| ||||||||||| || | ||||||||| | | || ||| Sbjct 671737 GCCGTCTTCAAGTTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCT 671794 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||||| || || || || ||||||| | || | | |||| Sbjct 671795 TCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTGTC 671835 >seq2 Length=8083196 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 |||||||||||||| ||| ||||| | ||||| || || || ||||||||||| Sbjct 5300564 TTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATC 5300505 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | |||||||||||| ||||| || || || ||| | || Sbjct 5300504 AGGCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTAACATTGTCG 5300445 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | || || ||| || ||||| || || || |||||||| || ||||| |||||| Sbjct 5300444 ATCGTATCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAG 5300385 >seq3 Length=7540789 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || ||||| ||||| || ||||||||||| |||| | ||| | || || Sbjct 3360413 GAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTC 3360354 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||||||||| || | |||||||| | || ||| |||||||| || Sbjct 3360353 TTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTC 3360294 Query 152012 T 152012 | Sbjct 3360293 T 3360293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820253016827