Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20calicioides_20[genbank_20GCA_5F001599795.1_202016-03-01] 37 sequences; 36,366,738 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 156 1e-32 seq2 120 7e-22 seq3 96.9 8e-15 >seq4 Length=4536433 Score = 156 bits (172), Expect = 1e-32 Identities = 163/210 (78%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| ||||| || ||||| || || || || || || |||||||| ||| ||| Sbjct 671664 CAAATCTTCGTCAAGACTCTTACCGGCAAGACCATTACGCTCGAGGTCGAATCGAGC--- 671608 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||| ||||||||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 671607 GATACCATCGACAACGTCAAATCCAAGATTCAAGACAAGGAAGGCATTCCTCCCGACCAG 671548 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 || || || |||||||||||||| || || ||||| || | || |||| |||||| || Sbjct 671547 CAGCGCCTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGCAC-CTTGAGCGATTACAA 671489 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | |||| |||||||| || ||||||| || Sbjct 671488 CATCCAGAAAGAATCCACCTTGCATCTCGT 671459 Score = 136 bits (150), Expect = 1e-26 Identities = 149/193 (77%), Gaps = 9/193 (5%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGTCA 177999 |||| ||||| || ||||| |||||||| ||| ||| |||||||| || || |||| Sbjct 671873 TCACCGGAAAGACCATCACGCTCGAGGTCGAATCGAGC---GACACCATTGACAATGTCA 671817 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 || ||||| |||||||| ||||| || ||||| |||||||| || || |||||||||| Sbjct 671816 AATCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGCCTGATCTTCGCCG 671757 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACA 178118 |||| || || ||||| || | || |||| ||| || ||| ||||||| ||||| || Sbjct 671756 GAAAGCAACTTGAAGACGGCCGCAC-CTTGAGCGACTACAACATCCAAAAGGAATCTACT 671698 Query 178119 CTGCATCTTGTTT 178131 || || |||| || Sbjct 671697 CTACA-CTTGGTT 671686 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| |||||||| | || ||||| ||| ||| Sbjct 671208 CAGATCTTTGTCAAGACTCTGACTGGAAAGACGATCACTTTAGAAGTGGAGTCCTCGGAC 671149 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| ||||| || || || ||||| || Sbjct 671148 ACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAACAG 671089 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||| || || | || ||||| | ||||| | || || ||| | Sbjct 671088 CGATTGATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACTCTATCTGACTACAACATT 671029 Query 178104 CAAAAAGA 178111 || || || Sbjct 671028 CAGAAGGA 671021 >seq2 Length=8083196 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || |||||||| ||||| || || || || ||| Sbjct 5300386 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCGGATACGATC 5300445 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || || || ||||| || ||||| ||||||||||| ||||||||||| || || Sbjct 5300446 GACAATGTTAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGCCTG 5300505 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || || ||||| ||||| | ||| | ||| || ||| ||||||| Sbjct 5300506 ATCTTCGCCGGCAAGCAACTCGAGGATGGCCGCACTTTGAGCGACTACAACATCCAAAA 5300564 Score = 95.1 bits (104), Expect = 3e-14 Identities = 242/362 (67%), Gaps = 15/362 (4%) Strand=Plus/Plus Query 214121 TCCCAAAGTTTTTCTGGTTGCTTTT---GCGGCAAATGGCATCTTTGTATGCGATGAAAG 214177 ||||| | || ||||||||||| || | ||| ||||| || || ||| | | Sbjct 1633004 TCCCAGA-TTCTTCTGGTTGCTCTTCTTGTTGCAC---GCATCCTTATAAAGCATGTATG 1633059 Query 214178 GCATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGA 214237 || | || |||| ||||| | |||||| || ||| || | |||||||| | | Sbjct 1633060 GCGTCCCAGTCTCGGTTTGAGACTCGAGAATGGCATACCACAGCTTCTGGGCCTTGATGG 1633119 Query 214238 CCTTTTTGGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGT 214297 || | ||| ||| || || |||||||| || || || | ||| || || ||||| Sbjct 1633120 TCTGTCGACCTCGTCCTTCCTTCTCGTACTTCTCGTAGAGTGCCTCGAACTCGTCACCGT 1633179 Query 214298 AGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357 |||||||| ||||||| || ||||||| |||||||| || |||| | | ||| | | Sbjct 1633180 AGACATCAGCAAGACCAGGGGCCTCGTGTGGGCAGAAGAGTGTCCAGTCTTGATTCTTCT 1633239 Query 214358 TGACTCTTTTCATGAAAAGGTCGGAAGTCCAGATTGCATAAAAAATCTCTCTGGCTCTCA 214417 || | | |||||| || || | ||||| | || || || | || | |||| Sbjct 1633240 CAACACGCTGCATGAAGAGATCCGGGGTCCAAAGGGCGTAGAACAAGTCACGTGCTC--- 1633296 Query 214418 TAAGGTCATCACCTCCC--GGTTTTTTCGC--GTCGACAAAGTCAAAGATATCAACGTGC 214473 | | || || | | || |||| |||||| || | ||||||||||| ||| ||||| Sbjct 1633297 TGACTTCTTC-CTTGCCGTGGTTCTTTCGCAGGTTCAAAAAGTCAAAGACGTCAGCGTGC 1633355 Query 214474 CA 214475 || Sbjct 1633356 CA 1633357 >seq3 Length=7540789 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||| ||||| || ||||||||||| || ||||||||||| || || |||||| Sbjct 3360294 GACAAGGAAGGCATCCCGCCAGACCAGCAACGCCTCATCTTCGCCGGCAAGCAACTCGAA 3360353 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | ||||| |||| || ||| |||| || || || || ||||| || || Sbjct 3360354 GACGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTGCACCTGGT 3360409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730629356178