Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20mesophila_20[genbank_20GCA_5F000785215.1_202014-11-18] 507 sequences; 30,376,333 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq168 111 1e-19 seq70 102 6e-17 >seq168 Length=68123 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || || || || ||||| ||||| || || | Sbjct 27521 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAGACTATTACTCTAGAAGTCGAATCATCC 27462 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||| || ||||| || || | || || ||||| Sbjct 27461 GACACGATCGACAATGTCAAGTC-AAAGATCCAAGACAAGGAGGGAATCCCACCCGATCA 27403 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| ||||| ||| |||| || | || ||| | ||| ||||| Sbjct 27402 GCAGCGATTGATCTTTGCAGGCAAGCAATTGGAGGATGGTCGAACTCTCTCCGACTACAA 27343 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||| ||| | ||||| || || || |||| || || Sbjct 27342 CATCCAAAAGGAGAGCACCCTGCATTTGGTGTTGAGACTGCGTGGTGG 27295 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || || |||||| | ||||| || || | Sbjct 27749 ATGCAAATCTTTGTCAAGACCCTCACAGGCAAGACAATCACTTTGGAAGTCGAGTCATCC 27690 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || ||||| ||| | || || || || Sbjct 27689 GACACCATCGACAATGTCAAGTCCAAGA-TCCAAGATAAAGAGGGTATTCCACCTGACCA 27631 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || ||||||||||| ||||||| | || ||| | ||| ||||| Sbjct 27630 ACAGCGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGTCGAACTCTCTCCGACTACAA 27571 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 27570 CATTCAGAAGGAGTCAAC 27553 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || ||||| || ||||| || || || || |||| |||||| |||| | | || Sbjct 28181 ACCGGAAAGACCATCACCCTTGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGTCC 28122 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || || || ||||| | || || ||||| || || | || ||||| ||||| Sbjct 28121 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAACGCCTTATCTTTGCTGGCAAG 28062 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||||| ||||||| || || || ||||||||||||| ||||| || || || || ||| Sbjct 28061 CAACTTGAAGACGGCCGTACCCTAAGCGATTACAACATCCAAAAGGAATCTACCTTGCAT 28002 >seq70 Length=128403 Score = 102 bits (112), Expect = 6e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||||||||| || || ||||| || || || || || | ||||| | Sbjct 69553 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGACACCATC 69612 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | || | || ||||| ||||| | || ||||| || ||||| || Sbjct 69613 GACAATGTCAAGTCCAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGACCAGCAGCGATT 69671 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || |||||||| || ||||| ||||| | ||||| | ||||||||||||| ||||| Sbjct 69672 GATCTTTGCCGGAAAGCAACTTGAAGATGGCCGCACCCTCAGCGATTACAACATCCAAAA 69731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007511417556