Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20mesophila_20[genbank_20GCA_5F000836275.1_202015-02-23] 9 sequences; 29,273,723 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq2 109 5e-19 seq1 93.3 4e-14 >seq3 Length=5104443 Score = 114 bits (126), Expect = 1e-20 Identities = 273/407 (67%), Gaps = 13/407 (3%) Strand=Plus/Minus Query 44786 ATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATGAAAAGATA 44845 || |||||| | |||| |||||||| ||||| |||| | || | ||||| Sbjct 4691915 ATTCCCTGCATCCGCAAGAAGGCCGACTGGGCTTTGAAATGGATCGCAGATGATGCTTCG 4691856 Query 44846 AC-TTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAG 44904 | ||||| | | || |||| |||||||| ||| || || | ||||| || || Sbjct 4691855 TCGTTTGGTC-AGCGTCTGGTGGCATTCGCTGCTGTTGAGGGTATCTTCTTCTCTGGCTC 4691797 Query 44905 TTTTGCGGCGATATTTTACATGAAAACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAA 44964 || || || || || | |||| |||||||| | ||||| || |||| || ||| Sbjct 4691796 ATTCGCCGCCATCTTCTGGTTGAAGGCCAAGGGACTTATGCCTGGTTTGACCTTCTCCAA 4691737 Query 44965 CGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-CTACTATAATA 45023 ||| ||||| || ||||||| || |||||||| ||||||||||| | |||| | | Sbjct 4691736 CGAGTTGATCTCTCGAGACGAGGGCATGCACACCGACTTTGCCTGCTTATTACTTCAGCA 4691677 Query 45024 CGAGAGTCGATCAAAAGTTGGACGCGCCCACCGTCAACGA---CATGTTCTCCGAAGCCG 45080 | | | || ||| ||| |||| ||| ||| ||| || | || |||| Sbjct 4691676 C----CTTAACCACAAGCCAGAC---CCCAAGCTCATCGAAGCCATCATCACTGAGGCCG 4691624 Query 45081 TGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACG 45140 | |||||||||| ||||| || | || ||||| ||| | | | || ||||||| Sbjct 4691623 TTGCCATCGAGAAAGAATTCTTGACCGATGCTCTTCCCTGTGCTCTTCTTGGCATGAACG 4691564 Query 45141 CGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTC 45187 | || ||||| | |||| || ||||| |||||||| ||||| ||| Sbjct 4691563 CCAAGCTGATGCAACAGTATATCGAGTTCGTCGCCGACCGTCTGCTC 4691517 >seq2 Length=5498963 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || ||||| |||||||||||||| | ||||| ||||||||| || |||||| Sbjct 3944201 GTAGATTCCTTTTGGATGTTGTAATCGCTTAGGGTGCGGCCATCCTCGAGTTGCTTTCCA 3944142 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || || |||||||| ||||| ||||| ||||| || || || || Sbjct 3944141 GCGAAGATAAGGCGTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGACTTG 3944082 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | || | |||||| || ||| ||||| | ||| | || || ||||||| Sbjct 3944081 ACATTGTCAATGGTGTCGCTGGACTCCACCTCAAGGGTGATGGTCTTTCCGGTCA 3944027 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || || || || |||||||| || |||| ||||| || || || || Sbjct 3944435 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCTTCAAGTTGC 3944376 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||||||| ||||||||||||| ||||| ||||| ||||| ||||| || |||||| Sbjct 3944375 TTTCCAGCGAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTG 3944316 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||||| | || | ||| || | ||| || |||| ||| | || || ||||| Sbjct 3944315 GACTTAACGTTGTCAATGGTATCGCTAGACTCCACTTCGAGGGTGATGGTCTTTCCGGTG 3944256 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| Sbjct 3944255 AGAGTCTTGACGAAGATTTGCAT 3944233 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||||||||||| || | || ||| ||||| |||||||| ||| Sbjct 3944916 ACCACCACGCAGTCTCAACACCAAATGCAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGA 3944857 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || ||| || | ||||| || || |||| | ||||||||||| || || Sbjct 3944856 AAGAGTTCGACCATCTTCCAATTGTTTGCCTGCAAAGATCAATCGCTGCTGATCAGGTGG 3944797 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||| |||||| || ||| || || | |||| |||||| | ||||| Sbjct 3944796 GATACCCTCTTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGACGATTCGAC 3944737 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| ||||| ||||| || || |||||||| Sbjct 3944736 TTCTAGAGTAATAGTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 3944689 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||| | ||| | || | |||||||| || ||||||||||| || Sbjct 3944689 TACCACCTCGCAGTCTGAGCACGAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTG 3944630 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || ||| || | |||||| || ||| |||| | ||||| || || |||| Sbjct 3944629 ACAGAGTCCGACCATCTTCCAACTGTTTACCGGCGAAGATCAATCGCTGTTGGTCTGGAG 3944570 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| || ||| || ||| || || | |||| |||||| | ||||| Sbjct 3944569 GAATACCCTCTTTATCTTGGATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGA 3944510 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || ||||| || || || || || || || ||||| Sbjct 3944509 CTTCTAGAGTGATTGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 3944461 >seq1 Length=6137194 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| |||||||||||||| | ||||| ||| |||||||| ||||| || |||| Sbjct 5194748 TTTTGGATGTTGTAATCGCTGAGGGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATC 5194807 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || ||||| || || ||||||||| || || || || | ||| Sbjct 5194808 AATCGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCG 5194867 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | ||| ||||| | ||| | || ||||| || || || || || || Sbjct 5194868 ATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 5194926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830352414228